Gene Information

Name : SCAB_1671 (SCAB_1671)
Accession : YP_003485963.1
Strain : Streptomyces scabiei 87.22
Genome accession: NC_013929
Putative virulence/resistance : Virulence
Product : adenylation protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG1021
EC number : -
Position : 185627 - 187210 bp
Length : 1584 bp
Strand : -
Note : -

DNA sequence :
GTGCCGTGGCCCGAGCCGTGCGCCGACGACTACCGGGCCAGGGGGTACTGGAACGACGAGATTCTCGGCAGCCTGCCCAT
GTCCGCCCCGGGCGCGCGGGACAGGCCGGCGGTCGTCACCGCCACCCGCACCCTGACCTACGGCGAGATGGACCGGGCGG
CGGACCGGCTCGCCGCCGGACTGCGTGGCCTCGGTCTCGGTTCCGGTGACCGCGTCGTAGTCCAACTACCCAACGATGTC
GAGCTCTTGGTGCTGTGCATTGCCCTGTTCCGGCTGGGGGCGCTGCCGGTGTTCGCCTATCCCGCGCACCGGGCGGCGGA
GATCGTCCACCTCGTCAACAGCGCGGAAGCGGTGATGTACGTCTGCGCGGACGAGGCGCTCGACTGCGATTACCGGATCA
TCGCCAAGGACGTGCTGGCGGGCGCGGTCACGCTGCGGCACGTGCTCGTGGCCGGCGACCCGGGCCCCTTCGCGGCGCTC
GCGGAGGTCGACGGGGACCCGGTGGACCTGCCGGTGCCCGACGCGCGGGAGGTGGCCTTCTTCCTGCTCTCCGGTGGCAC
CTCCGGGCCGCCGAAGCTCGTCCCGCGCACGCATGCCGACTACGCGTACCAGCTGCGCCAGAGCTCACGGCTGTGCGGGT
TCAGGAGGGACACCCGCTATCTGTGCGCGCTGCCCATGGGCCACAACTTCGCCCTGGGGTGCCCCGGTGTGCTGGGCACG
CTGCGCATGGGCGGCACCGTGGTGCCGGCCATGGCACCCACCCCCGAACTGTGCTTCCCCCTGATCGAGAGCGCCGGCGT
GACGGTCACCTCGCTGTCGCCGCCGCTGGTGTCGCTGTGGCTCGACGCCGCCGAGCGGACCGCGCACCACCTGGGGTCGC
TCGAACTGCTCCAGGTCGGCGAGGCCAGGCTCTCCCCCGGGACGGCGCGCAGGGTGTCCGGGGGGTTCGGCTGTGTCCTG
CAGCAGGTGTACGGCATGGCGGAGGGCCTGCTCAACTACACGCGGCTCGACGACCCCGAGAACGTCGTCCTCCATACGCA
GGGCCGCCCCCTGGCACCGGCCGACGAGACACGGGTGATCCGCGAGGACGGCCAGGAGGCGGGGCCGGCCGAGGAAGGGG
AACTGCTGACCCGCGGCCCCTACACGGTGCGCGGCTATTACCGGGCCGAGGAGAGCGACCGAGCTCAGTTCACCGGTGAC
GGCTTCTTCCGCACGGGCGACGTGGTCCGGCGGACGGCCGCGGGCTACTTCGAGGTGGTGGGGCGCACCAACGATGTCGT
CAACCGGGGCGGGGAGAAGGTGCCGGCCAGGGAGGTCGAGCAGTATCTGCTCGGCGACCCTCGCATCGCCCTGGCCGCCG
TGATCGGTGTTCCGCATGCGGAGCTCGGCGAGCAGACCTGCGTGTGCGTGGTCCCACGGGAGGCGGAGCACCCCCCTACG
CTGTCGGAGGTGCGGGACGGGCTCAGGGACCGCGGCATCGCGCCGTACAAGCTCCCCGACCGGCTGGTGGTGCTCGACCG
GATGCCGCTGACGGCCGTCGGGAAGATCGACAAGAGCGCGCTCAGAGCCCGGCTCAAGCACTGA

Protein sequence :
MPWPEPCADDYRARGYWNDEILGSLPMSAPGARDRPAVVTATRTLTYGEMDRAADRLAAGLRGLGLGSGDRVVVQLPNDV
ELLVLCIALFRLGALPVFAYPAHRAAEIVHLVNSAEAVMYVCADEALDCDYRIIAKDVLAGAVTLRHVLVAGDPGPFAAL
AEVDGDPVDLPVPDAREVAFFLLSGGTSGPPKLVPRTHADYAYQLRQSSRLCGFRRDTRYLCALPMGHNFALGCPGVLGT
LRMGGTVVPAMAPTPELCFPLIESAGVTVTSLSPPLVSLWLDAAERTAHHLGSLELLQVGEARLSPGTARRVSGGFGCVL
QQVYGMAEGLLNYTRLDDPENVVLHTQGRPLAPADETRVIREDGQEAGPAEEGELLTRGPYTVRGYYRAEESDRAQFTGD
GFFRTGDVVRRTAAGYFEVVGRTNDVVNRGGEKVPAREVEQYLLGDPRIALAAVIGVPHAELGEQTCVCVVPREAEHPPT
LSEVRDGLRDRGIAPYKLPDRLVVLDRMPLTAVGKIDKSALRARLKH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ybtE NP_993003.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 7e-93 46
ybtE YP_070120.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 7e-93 46
ybtE CAA21394.1 - Virulence HPI Protein 7e-93 46
ybtE YP_853079.1 yersiniabactin siderophore biosynthetic protein Virulence PAI IV APEC-O1 Protein 7e-93 46
irp5 CAA73130.1 Irp5 protein Virulence HPI Protein 6e-93 46
ybtE AAA93464.1 yersiniabactin 2,3-dihydoxybenzoate-AMP ligase Virulence HPI Protein 5e-93 46
irp5 YP_001006819.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 8e-93 46
irp5 YP_002346898.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 7e-93 46
ybtE NP_669710.1 salicyl-AMP ligase Virulence HPI Protein 7e-93 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCAB_1671 YP_003485963.1 adenylation protein VFG1817 Protein 2e-93 48
SCAB_1671 YP_003485963.1 adenylation protein VFG0168 Protein 4e-99 47
SCAB_1671 YP_003485963.1 adenylation protein VFG0932 Protein 2e-95 43