Gene Information

Name : SCAB_10851 (SCAB_10851)
Accession : YP_003486825.1
Strain : Streptomyces scabiei 87.22
Genome accession: NC_013929
Putative virulence/resistance : Virulence
Product : two component system response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1223260 - 1223994 bp
Length : 735 bp
Strand : +
Note : -

DNA sequence : 
ATGGACGAGCCGCGTGCGACATCTCTTCTGCACCGCCCGGACGGAGACCCCGTCCGGGTCCTCGTCGTCGACGACGAACC
CGACGTCACCGATGTCCTGGCCGGAGTCGTCACCGGCGAGGGGTGGCAGGTGCGCACCGCCGGCGACGGAGCGACCGCGC
TGGCGACTGCCCGTGTCTTCCGCCCCGACGCCGTGGTACTGGACTGGATGCTGCCCGACCTGGACGGCCTGCAGGTCCTG
CGGGCACTCAGACGCGAGATGCCCGAGGTGTGCGTCCTGTTCCTGACCGCCCGCGACGCGGTCGAGGACCGCATCGCGGG
GATCACCGCGGGCGGTGACGACTACGTCACCAAGCCCTACAGTCTGGAGGAGGTCCTGGCGCGACTGCGCGGGCTGCTGC
GGCGGGCCGGAATGACCGCCGGGCAGGGCACGAACCGGCTCAGGGTCGGAGACCTCACCATGGACGAGGAGGCCCGGGAG
GTCCGGCGCGGCGGGGCCGTCGTCGAGCTGTCCCGCACCGAGTTCGAACTCCTGCGCTTCCTCATGCGCAACCCCCGCCG
GGTCCTGTCCAAGGAGCAGATCCTCGACCGGGTGTGGTCCTACGACTTCGGCGGCCGCGCCCACATCGTCGAGCTCTACA
TCAGCTACCTGCGCAAGAAGATCGACGCCGGACGCTCCCCGATGATCCACACCGTGCGCGGCGTCGGCTACGTCCTCAAA
CCGGAAGCCTCGTGA

Protein sequence : 
MDEPRATSLLHRPDGDPVRVLVVDDEPDVTDVLAGVVTGEGWQVRTAGDGATALATARVFRPDAVVLDWMLPDLDGLQVL
RALRREMPEVCVLFLTARDAVEDRIAGITAGGDDYVTKPYSLEEVLARLRGLLRRAGMTAGQGTNRLRVGDLTMDEEARE
VRRGGAVVELSRTEFELLRFLMRNPRRVLSKEQILDRVWSYDFGGRAHIVELYISYLRKKIDAGRSPMIHTVRGVGYVLK
PEAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 9e-24 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 6e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCAB_10851 YP_003486825.1 two component system response regulator BAC0083 Protein 2e-26 45
SCAB_10851 YP_003486825.1 two component system response regulator BAC0197 Protein 3e-25 45
SCAB_10851 YP_003486825.1 two component system response regulator BAC0125 Protein 1e-28 42
SCAB_10851 YP_003486825.1 two component system response regulator AE016830.1.gene1681. Protein 5e-31 41
SCAB_10851 YP_003486825.1 two component system response regulator HE999704.1.gene1528. Protein 8e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCAB_10851 YP_003486825.1 two component system response regulator VFG1386 Protein 3e-46 56
SCAB_10851 YP_003486825.1 two component system response regulator VFG1390 Protein 2e-40 48
SCAB_10851 YP_003486825.1 two component system response regulator VFG1389 Protein 8e-35 48
SCAB_10851 YP_003486825.1 two component system response regulator VFG0596 Protein 4e-24 42