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Name : lysS (HMPREF0868_0952) Accession : YP_003475258.1 Strain : Clostridiales genomosp. UPII9-5 Genome accession: NC_013895 Putative virulence/resistance : Virulence Product : lysine--tRNA ligase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 808788 - 810770 bp Length : 1983 bp Strand : + Note : identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM PF01588; match to protein family HMM TIGR00499 DNA sequence : ATGAGTGCTATTAACGAGTCAAACAAGACCATAAGTCAGAATGAACAAATGCAAATCAGATGTGATAAATTGTCTCAACT ACGAGCGGCCGGTAAAGATCCATTTGAACAGGTGCGTTTTGAAAGAACTCATTCATGCGAAGAAATTTGTCGTGATTTTG CGAATTTGGAAGGTAAACGAGTTAAAATTGCCGGGCGCATAATGAGTAAGCGAGGAATGGGTAAGGTCAGTTTTTGCGAT TTAAACGACAAATTCGGCCACATTCAAATTTTTACAAAAATAGATTTATTGGGCGAGGAAGCATATAAGGAGTGGCAAAA ACTCGACATAGGCGATTGGGTAGGCATTGATGGAGAAGTGATGCGCACACAACGCGGAGAAATTTCCATACGCAATTACG GTTACGTTTTATTGAGCAAAAGCATTCGTCCGCTACCCGAAAAGTTTCATGGTTTGCAAGATATGGATACCCGTTATCGT CGCCGTTACCTTGATTTGATCGTCAATCCGGAAGTGCGCCAGACCTTTGCCAAACGTAGCATTATAATTCGCACTTTGCG CAACTATCTTGATAATATAGACTTTTTGGAGGTCGAGACGCCGATCTTAAATGTTATTCCCGGCGGTGCAGCGGCGCGGC CGTTTATTACTCACCACAATGCGATGAATATTGATTTGTATCTGCGTATTGCGCCGGAGTTGTATTTAAAACGCCTTATT GTTGGTGGTATGGATCGAGTATATGAAATAGGACGTCAGTTCCGCAATGAGGGAATGGACACCAAACATAATCCAGAATT TACTTTGCTCGAATTGTATCAGGCCTTTACCGATTATAAGGGTATGATGGAGCTTACCGAAACTTTGATCTACGAGTGCG CGATGGCTGCTTGCGGCAAAACTACAGTTACGTGGCGCGGTGTTGACGTGGATTTGAAGCCGCCGTTCCGCCGTTTGACT ATGCGGGATGCGGTATTACAATATTCTGGTGTTGACTTTGATCAGATCAAAGATTTGCCTGCTGCTGTTGCAGTTGCCAC TGAGCATAATTTGCCAGTCGAACCTGGTATGGGACGCGGTGATATTTTTAATCTGTTCTTTGAAACATACGTTGAAGATA AGCTAGTACAACCGACTTTTATATACGATTATCCTATTGAGATTTCTCCGCTAACCAAGAAAAAGCCGGGCCGCCCTGAA TTAACTGAGCGCTTTGAATTGTTTATTTGTGGTGCTGAATTCGCCAATGCTTATTCTGAGCTTAATGATCCGATTGACCA GCGGGAGCGATTTAAAGCTCAATTGCGCAAGCGTGAGCTCGGTGATGAAGAAGCGAATCGTATGGATGAAGATTATTGCA TGGCTTTGGAGTATGGCCTGCCGCCTACAGGTGGTATGGGAATGGGCATAGATCGCTTGACGATGTTGCTCACTGATTCT GAATCAATTCGTGATGTGTTACTTTTCCCAACAATGAAGCCGCTGAGTGACGGGGTAGGAAAAGTTTTAGGAAATGCCGA AAATGCTGCGGTAACGTCAAGCGGAGATGCTGAGATAACCGAAGCTGCGGTAACGCCAAATCAAGCTGTGCATGAAGTTA TTGATTTTAGTCGCGTGGAGATAGAACCGCTGTTTACCGAAACGGTTGATTTTGATACGTTCAGCCGCTCAGATTTCCGG GCGGTAAAAGTTAAAGCTTGTGTAGCCGTGCCTAAGAGCAAGAAGCTTTTGCAGTTTACGCTAGATGATGGAACTGGAAC TGATAGAATCATTTTGTCAGGCATTCATGCTTATTATGAGCCGGAAGAGCTAGTCGGTAAGACGTTGGTGGCTATTACCA ACTTGCCGCCGCGTAAAATGATGGGCATAGAATCTTGCGGAATGCTGCTTTCAGCGGTCAATAAGCTTAAAGAGTCAGAG GAAGAGGAATTGCATCTTCTAATAGTCGATGATCATATACCAGCTGGCGCAAAGCTGTATTGA Protein sequence : MSAINESNKTISQNEQMQIRCDKLSQLRAAGKDPFEQVRFERTHSCEEICRDFANLEGKRVKIAGRIMSKRGMGKVSFCD LNDKFGHIQIFTKIDLLGEEAYKEWQKLDIGDWVGIDGEVMRTQRGEISIRNYGYVLLSKSIRPLPEKFHGLQDMDTRYR RRYLDLIVNPEVRQTFAKRSIIIRTLRNYLDNIDFLEVETPILNVIPGGAAARPFITHHNAMNIDLYLRIAPELYLKRLI VGGMDRVYEIGRQFRNEGMDTKHNPEFTLLELYQAFTDYKGMMELTETLIYECAMAACGKTTVTWRGVDVDLKPPFRRLT MRDAVLQYSGVDFDQIKDLPAAVAVATEHNLPVEPGMGRGDIFNLFFETYVEDKLVQPTFIYDYPIEISPLTKKKPGRPE LTERFELFICGAEFANAYSELNDPIDQRERFKAQLRKRELGDEEANRMDEDYCMALEYGLPPTGGMGMGIDRLTMLLTDS ESIRDVLLFPTMKPLSDGVGKVLGNAENAAVTSSGDAEITEAAVTPNQAVHEVIDFSRVEIEPLFTETVDFDTFSRSDFR AVKVKACVAVPKSKKLLQFTLDDGTGTDRIILSGIHAYYEPEELVGKTLVAITNLPPRKMMGIESCGMLLSAVNKLKESE EEELHLLIVDDHIPAGAKLY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 9e-109 | 47 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 7e-83 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_003475258.1 | lysine--tRNA ligase | VFG1668 | Protein | 5e-109 | 47 |
