Gene Information

Name : HMPREF0868_0964 (HMPREF0868_0964)
Accession : YP_003475270.1
Strain : Clostridiales genomosp. UPII9-5
Genome accession: NC_013895
Putative virulence/resistance : Unknown
Product : pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0214
EC number : -
Position : 793482 - 794348 bp
Length : 867 bp
Strand : -
Note : identified by match to protein family HMM PF01680; match to protein family HMM TIGR00343

DNA sequence :
ATGGAGGTTCAAATGAAAACTGCTATCAATCAAAAACTTCTCGGTGGCGTTATTATGGATGTCACCACACCCGAGCAGGC
AAAAATTGCCGAGGCAGCCGGTGCTGTCGCCGTAATGGCTTTGGAACGCATTCCGGCCGATATTCGAGCAGCCGGCGGAG
TATCGCGCATGTCAGATCCAAAAATGATTCGCAGTATTATGGAAGCGGTAAGCATTCCGGTTATGGCTAAGGTGCGTATC
GGTCATTTTGTGGAAGCACAAATTTTGGAGGCCATCGGCATCGATTATATTGATGAAAGTGAAGTTCTATCACCGGCCGA
CAACGTTTATCATGTCGATAAAACCAAGTTTAATACCCCATTTGTCTGTGGGGCTCGCAATTTGGGCGAAGCATTACGTC
GAATACAAGAAGGAGCTTGTATGATTCGGACTAAAGGTGAGGCCGGTACAGGTGATGTTGTTCAAGCAGTTTCGCATATG
AGACAAATTCAAGCTGAAATTCGCGCCGTAGTTTCAATGGCTGAAAATGAACTCTATCACGCCGCCAAGGATTATGCTGT
CCCGTATGAACTGCTGAAGTATGTTCATGACAACGGTAAATTATCTGTTCCGAACTTTTCGGCCGGCGGCGTGGCTACTC
CTGCCGATGCTGCTTTAATGCGTCAGTTGGGTGCAGAAGGCGTATTTGTAGGAAGCGGTATTTTTGCATCCGGTGATCCT
GAAAAACGCGCTAGAGCTATTGTAAAGGCAGTACGTAATTATAATGATCCGGCCGTACTCGCGGAAGTTTCCACCGGCCT
CGGTAAGGCCATGGTAGGAATTAATGAAGAAGAAATAAGAACACTGATGGCGGAACGCGGCGTATAA

Protein sequence :
MEVQMKTAINQKLLGGVIMDVTTPEQAKIAEAAGAVAVMALERIPADIRAAGGVSRMSDPKMIRSIMEAVSIPVMAKVRI
GHFVEAQILEAIGIDYIDESEVLSPADNVYHVDKTKFNTPFVCGARNLGEALRRIQEGACMIRTKGEAGTGDVVQAVSHM
RQIQAEIRAVVSMAENELYHAAKDYAVPYELLKYVHDNGKLSVPNFSAGGVATPADAALMRQLGAEGVFVGSGIFASGDP
EKRARAIVKAVRNYNDPAVLAEVSTGLGKAMVGINEEEIRTLMAERGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
DIP0227 NP_938620.1 pyridoxal biosynthesis lyase PdxS Not tested Not named Protein 7e-81 68
pdxS YP_005141805.1 pyridoxine biosynthesis protein Not tested Not named Protein 1e-80 68
pdxS YP_005137204.1 pyridoxine biosynthesis protein Not tested Not named Protein 8e-81 67