Gene Information

Name : HMPREF0868_1200 (HMPREF0868_1200)
Accession : YP_003475481.1
Strain : Clostridiales genomosp. UPII9-5
Genome accession: NC_013895
Putative virulence/resistance : Unknown
Product : sigma-70, region 4
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 553520 - 553942 bp
Length : 423 bp
Strand : +
Note : identified by match to protein family HMM PF04545; match to protein family HMM PF08281

DNA sequence :
ATGAAACCATCTTCTTTTCAGACCACAATAGAAAATCAGTTTGACTATATCTGTAAACGTGCTATGGAAGACGAGCGAAA
GAATTATATGCTTTATCTTTCAAGGATTGCAAAGCGTGAGGTGTCCTTTTCGGATGTTGGCGATTATCTTGTTAGCCAGT
TTGCGACAACAGATAACTATTCAACTGACTTTCAGATTTTTACACTCAATGGGTTATCAGTAGGCGTTGAAAATGATTTG
TTGAGTGAAGCATTACGTGAGTTGCCAGACAAGAAACGTGAAATTCTACTGCTGTTTTACTTTATGGACATGAGCGATTC
AGAAATTGCAGACCTGTTGAAATTGAACCGTTCTACTGTCTATCGGCATAGAACCAGTGGACTAGCCTTAATTAAAAAGT
TTATGGAGGAATTTGAAGAATGA

Protein sequence :
MKPSSFQTTIENQFDYICKRAMEDERKNYMLYLSRIAKREVSFSDVGDYLVSQFATTDNYSTDFQIFTLNGLSVGVENDL
LSEALRELPDKKREILLLFYFMDMSDSEIADLLKLNRSTVYRHRTSGLALIKKFMEEFEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSU98_0925 YP_001200483.1 hypothetical protein Not tested 89K Protein 4e-60 100
SSU05_0919 YP_001198285.1 hypothetical protein Not tested 89K Protein 4e-60 100