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Name : serS (HMPREF0868_1259) Accession : YP_003475535.1 Strain : Clostridiales genomosp. UPII9-5 Genome accession: NC_013895 Putative virulence/resistance : Unknown Product : serine--tRNA ligase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 485904 - 487202 bp Length : 1299 bp Strand : + Note : identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414 DNA sequence : ATGTTAGATATTCAGATGATTCGCAAAGAAGCGCCAAAAGTGCAGGAATTACTAGCGCGCAAGGGATGTAATGTAGATTT TACGGAGTTCTTGAATAAGGATAAGTCCAGACGTGATCTTATAGCGGCAGTGGAAAATTTAAAAGCACGTCGCAATCAGG TTTCCGCACAAATCCCGCAGCTAAAGAAAGCAAAGGCTGATACGACGGAAATCATGGCTGAAATGAAGGATATTGCGGCA CAGATTAAAACTATGGACGCTGAGTTAGCAGCGCTTGAGAAAGATCAATTAGAATTTTTGGCTGGATTGCCGAATTTGCC GGCGGAAGATCTGCTGCCGGGCGGTAAGGAAAACAACCGTGTTGTTAAGGTGTTCGGTAATAAGCCTGAGTTTAATTTCC CGGCCAAGCATCATGTTGAGCTTGCCGAATCGCTGGATATAATTGATTATGCGCGCGGAAGCAAGCTTTCCGGTAATGGT TTTTGGATATACAAGAACATGGGAGCAAGGCTGGAATGGGCTTTACTGAACTATTTTATGCAGGAGCATCTTAAGGATAA CTATGAGATGTTGCTAGTGCCTCATATCCTGAACTATACTTGTGGTTTCACAGCCGGACAATTCCCTAAATTTAAAGAGG ATGTATTTTGGTTGGTTTCCGAAGAAGGCACGGAAGAGGCTAATCGTCAATTCATTTTGCCGACAGCTGAAACAGCTCTG GTCAATTTGTACCGCGATGAAATTTTGGATGAAAGCGATCTGCCGAAGAAGTTTTTTGCCTATACGCCTTGCTATCGCAA AGAGGCAGGCAGTTATCGTGCGGAAGAACGTGGGATGATTCGCGGTCACCAATTCAATAAAATTGAAATGTTTCAGTATA CTTTGCCGGAAAATTCGGCGCAGGCTTTTGATGAGTTGGTTGACAAAGCATGTCGCTTGGTAGCCGGTCTAGGTTTGCAT TTCCGCTTATCCAAACTTGCTGCCGGTGATTGTTCGGCGTCGATGGCCAGAACTGATGATATTGAAATTTGGATTCCGAG CATGAACGATTACAAGGAAGTAAGTTCGGCATCCAATGCCTGTGATTACCAAGCTAGACGCGGCAATATGAAATTTAGAC GCAAGGCTACCGGCAAAACCGAATATCTGCACACGCTTAATGCTTCTGGCCTAGCCACTTCTCGTGTTTTACCGGCTATT CTGGAACAGAATCAACAGGCTGATGGAAGTGTTGTCGTGCCGGAAGTTTTACGTCCTTTCCTCGGTGGAATTGATGTAAT CAAACCACAACAGGTTTAA Protein sequence : MLDIQMIRKEAPKVQELLARKGCNVDFTEFLNKDKSRRDLIAAVENLKARRNQVSAQIPQLKKAKADTTEIMAEMKDIAA QIKTMDAELAALEKDQLEFLAGLPNLPAEDLLPGGKENNRVVKVFGNKPEFNFPAKHHVELAESLDIIDYARGSKLSGNG FWIYKNMGARLEWALLNYFMQEHLKDNYEMLLVPHILNYTCGFTAGQFPKFKEDVFWLVSEEGTEEANRQFILPTAETAL VNLYRDEILDESDLPKKFFAYTPCYRKEAGSYRAEERGMIRGHQFNKIEMFQYTLPENSAQAFDELVDKACRLVAGLGLH FRLSKLAAGDCSASMARTDDIEIWIPSMNDYKEVSSASNACDYQARRGNMKFRRKATGKTEYLHTLNASGLATSRVLPAI LEQNQQADGSVVVPEVLRPFLGGIDVIKPQQV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 7e-86 | 45 |
