Gene Information

Name : HMPREF0868_0076 (HMPREF0868_0076)
Accession : YP_003474431.1
Strain : Clostridiales genomosp. UPII9-5
Genome accession: NC_013895
Putative virulence/resistance : Virulence
Product : putative DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 15323 - 15991 bp
Length : 669 bp
Strand : +
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGGCGCTTATTTATATCGTAGAGGATGATGATAATATTCGTGAGATTGAGAAATTCGCGCTATTAAACGCTGGACACCA
AGTGTGGGAATTTGCCTGTGCAACTGCTTTTTATCGTCAATTAGAAAAGATGCAGCCGGAATTGTGTATACTTGATATTA
TGTTACCTGATGAACCGGGGGATGTTATTTTAAAAAAGCTGCGGATGGACTCACATACAGCTGGTCTGCCGGTAATTATG
GTGACGGCTAAAACGAGTGATCTTGATTTGGTCAAAGGTATGGAAAATGGGGCTGATGATTACATCAAAAAACCGTTTTC
GGTCCTTGAATTGATGGCGAGGGTTAAGGCTTTGTTACGTCGTACTCAGAAACCGTCAATTGTTGAATTGCAGCTGGATG
CATTGACCGTCAACAGTGCCAAACGCGAAATTGCCATTGCCGGAAAGTTAGTTGATTTAACCTATAAAGAATTTGAATTG
ATCTATTTTATGCTGGCTAATAAAGGCATCGTTTTAAGCCGTGATACTTTGATGGATAAGGTCTGGGGCACTGACCATGA
GTTAAACTCACGTACCCTCGATATGCACATAAAAACATTGAGGCAAAAATTAGGCAGCTATGGTGGAAGAATTTGTACAG
TTAGAAATGTGGGCTATGTTATCAAATGA

Protein sequence : 
MALIYIVEDDDNIREIEKFALLNAGHQVWEFACATAFYRQLEKMQPELCILDIMLPDEPGDVILKKLRMDSHTAGLPVIM
VTAKTSDLDLVKGMENGADDYIKKPFSVLELMARVKALLRRTQKPSIVELQLDALTVNSAKREIAIAGKLVDLTYKEFEL
IYFMLANKGIVLSRDTLMDKVWGTDHELNSRTLDMHIKTLRQKLGSYGGRICTVRNVGYVIK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-20 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0868_0076 YP_003474431.1 putative DNA-binding response regulator CP004022.1.gene3215. Protein 3e-22 41
HMPREF0868_0076 YP_003474431.1 putative DNA-binding response regulator BAC0347 Protein 2e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0868_0076 YP_003474431.1 putative DNA-binding response regulator VFG1563 Protein 6e-21 41