Gene Information

Name : HMPREF0868_0158 (HMPREF0868_0158)
Accession : YP_003474502.1
Strain : Clostridiales genomosp. UPII9-5
Genome accession: NC_013895
Putative virulence/resistance : Virulence
Product : DNA-binding helix-turn-helix protein
Function : -
COG functional category : K : Transcription
COG ID : COG1476
EC number : -
Position : 1744558 - 1744758 bp
Length : 201 bp
Strand : -
Note : identified by match to protein family HMM PF01381

DNA sequence :
ATGAAAAATACAATTTCTCAATTAAGAAAGCAGCATAAAATAACTCAAGAAGAATTGGCAAATGAAGTTGGAGTAACAAG
ACAGACCATAACTTCCATTGAAACCGGAAAATATATAGCGTCACTGCCGTTGGCTTTTAAAATTGCTAAGTTTTTTGATA
TGAGTATTGAAGAAATATTTAGTATAGAAGAGGATGATTAA

Protein sequence :
MKNTISQLRKQHKITQEELANEVGVTRQTITSIETGKYIASLPLAFKIAKFFDMSIEEIFSIEEDD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH2314 YP_254229.1 hypothetical protein Not tested ¥ðSh1 Protein 2e-09 56
EF0524 NP_814301.1 Cro/CI family transcriptional regulator Not tested Not named Protein 4e-05 52
ef0042 AAM75247.1 EF0042 Virulence Not named Protein 3e-05 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0868_0158 YP_003474502.1 DNA-binding helix-turn-helix protein VFG2168 Protein 1e-05 52
HMPREF0868_0158 YP_003474502.1 DNA-binding helix-turn-helix protein VFG2175 Protein 1e-05 52