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Name : clpC (HMPREF0868_0472) Accession : YP_003474803.1 Strain : Clostridiales genomosp. UPII9-5 Genome accession: NC_013895 Putative virulence/resistance : Virulence Product : negative regulator of genetic competence ClpC/MecB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1340832 - 1343606 bp Length : 2775 bp Strand : - Note : identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 DNA sequence : ATGAAGATAATTCTTACCGAAAGCACGCAACATGTTTTGCAGGTGGCCAACCAGCTAGCTAAATGTTATCGCATAGGCGA AATTGGCACTGAATATTTGTTGGGCGCTATGATTAAAGAGAAAAAAATGGGTAATGCCGATCTGATTTTGCAGAAACACG GCATAGATTTTGCTCAATACAACGCGGTTTTGGCCAAAATTAACCAAATGGAACCGCAAGATTTTAATTGGCCGGAACAC GAAGACTTGGAACGCATCGTGGCCAAGCTTTCGCAACGTGCCAAACAGATATTTGATCGAGCCGTACTTATGGTGCACAT GGGCAATAAGCCGCTGACAACTACCGCCCTACTTATTTCTCTACTCGAAGCAGGGGATTCAGTGGCGATCAGGATTTTGC ATAGCCTAGGTCTGTCGCTAGAGGTGTTCCAACGGGAGTTTATGGCTTTGCAGGAAGAGAACGGGGCCGATCCGGAATTG GCGGGCTATAACGAAGCTGAAGATGATGAGTCAGAGGAAGAAAGTGAGGATATTTCTGCAGAAGATAACGCAGTGATGAA GCAAGGTGGCCAGGGAAAACATGGCGGCAATGCGTTGAAGAAGTTCGGCAATGATTTGACGGAACGCTGCCGTAAGCAAA AAGTTGATCCGGTCATCGGGCGTAATGAGGAAATAAACCGCGTAATGCAAATCCTATGCCGTCGCACCAAAAACAACCCT TGCTTGATTGGCGAGCCGGGCGTTGGTAAAACTGCAGTGGTGGAAGGACTGGCTCAGAAAATTGCCGCCGGAGATGTGCC GGATATTCTGCAAGATAAGCGGATAATCAGCATTGATATGGGCGGTATGTTGGCCGGAGCCAAATATAGAGGTGAGTTTG AGGAACGTTTGAAGAAAGTTTTGGCTGAGGCCGGGCAAGCTGGGGATGTAATTCTATTCATTGATGAACTTCACACCCTA ATCGGTGCCGGGGCCGGTGAAGGATCGATTGACGCGGCCAATATTATGAAACCGATGCTGGCCAGAGGCGAGCTCCAAGT TATCGGTGCCACTACCTTGAACGAATATCGTAAATATATCGAAAAGGATGCGGCTTTGGAGCGGCGGTTCCAGCCGGTTA CCGTTGAAGAACCGTCGGAAGAGGACACTTTGGCAATTTTGCGGGGCGTACGGGAAAAATATGAAAACCATCACAAAGTG AAAATAACCGATGCAGCTTTGGAAGCGGCTGTCAAACTTTCCGTCCGCTATATCAATGACCGTTTCCTGCCGGACAAAGC CATTGATCTGATGGATGAGGCAGCGGCAAAACTACGCTTGGCGGGTTCTGGTAATAACAAACAGCTGCAAAAATTGCAAA AAGACCTTGATAAGCTGAAAGATGAAAAAGAACGGGCCGCTGCGGCTGAAAACTTTGAACAGGCGGCTGAGCTGTTGCAG AAACAGCAGGCGTTGGAAAATAAGCTCGTCAAAGTGAAGGCGGCAAAAAAGCATGAGCCGAGCGATGCCAAGGCTGTTTT GACGGAAGAAAATATTGCAGATATCGTGGCCGGTTGGACCGGAATCCCGGTAAAGCGGCTTACAGAAAATGATACAACTA GATTAAAAAATCTTGATAAGGAACTGAAGAGTCGTGTTATAGGTCAGGATGCCGCGGTCGATGCGGTGGTACAGGCCATC CGGCGTGGTCGTCTCGGTTTGAAAGATCCGCAGCGCCCCATCGGTTCGTTCCTGTTCCTCGGTACTACAGGTGTAGGTAA GACTGAACTGGCTAAGGCTTTAGCTGAAGTCATGTTTGGTGATCCTAACGCGATGATCAGGCTTGATATGTCGGAATATA TGGAAAAATTTGATGTATCTAAGCTCATCGGTTCGCCGCCGGGATATGTCGGTTATGATGAGGGCGGCCAATTGACCGAA AAAGTGAGACGCCATCCGTATTCGGTAATTCTGTTTGATGAGATTGAAAAAGCGCATCCGGATGTTTTCAACGCCTTACT GCAAATTTTGGAAGATGGCCGGTTGACGGACAGCCAGGGACGTACGGTTAAGTTTGCCAACACGATCATCATCATGACCT CGAACTTGGGAGCCAAGTTATTGCTGAACGGCAACAAGCGGATCGGCTTTGACTTTGCCGGTAAAGGTGGCGAACCAGAA CAGAATGATGACCGTAATTTGTACGGCGGTCGCAGCTATCAAGAGGCGGCTGATCTGGTCATCGCTGAAGCGAAACGTAC TTTCAATCCGGAATTTATCAACCGTATTGATGAAATTCTATTCTTTAAGATGCTGGATAAAAAGGCAATGCGCCAAATTG TTGACCTTATGCTCAAAGGTTTGGCGAAACGTATCAGTGAGCTCGGGATTAAGCTTACCGTAACTGATGCTGCAGCTGAT CGCTTGGCTGTTGAAGGCTATGACAGCTTGTACGGTGCAAGGCCATTGCGTCGGACGATTCAGAATCGAGTCGAGGATGA GTTCTCACAGGCGATGCTTGATGGTACAATTAAAAAAGGTGACGTGGCGGAGGTCGATATTGTCAAACAAGGGAAGGATG TTAAGTTTGTCGTTCGGCCGCAAGGAAGTGAGCGCACTACAGAAAGTAAGGGATCAGATTCCGATTCTGATGCGTCCGCC GATTCTGCCGCCCCAACCAATCAAGCTGATAAATCAGCAGGTGGTTCGATAGAACATCCGTACCAGGTATCCAGCGATTC GTCGGCTGAGCCTAAGGACACGGCAAAGGATGATAAGTCCAAGTCGGAAGATTAA Protein sequence : MKIILTESTQHVLQVANQLAKCYRIGEIGTEYLLGAMIKEKKMGNADLILQKHGIDFAQYNAVLAKINQMEPQDFNWPEH EDLERIVAKLSQRAKQIFDRAVLMVHMGNKPLTTTALLISLLEAGDSVAIRILHSLGLSLEVFQREFMALQEENGADPEL AGYNEAEDDESEEESEDISAEDNAVMKQGGQGKHGGNALKKFGNDLTERCRKQKVDPVIGRNEEINRVMQILCRRTKNNP CLIGEPGVGKTAVVEGLAQKIAAGDVPDILQDKRIISIDMGGMLAGAKYRGEFEERLKKVLAEAGQAGDVILFIDELHTL IGAGAGEGSIDAANIMKPMLARGELQVIGATTLNEYRKYIEKDAALERRFQPVTVEEPSEEDTLAILRGVREKYENHHKV KITDAALEAAVKLSVRYINDRFLPDKAIDLMDEAAAKLRLAGSGNNKQLQKLQKDLDKLKDEKERAAAAENFEQAAELLQ KQQALENKLVKVKAAKKHEPSDAKAVLTEENIADIVAGWTGIPVKRLTENDTTRLKNLDKELKSRVIGQDAAVDAVVQAI RRGRLGLKDPQRPIGSFLFLGTTGVGKTELAKALAEVMFGDPNAMIRLDMSEYMEKFDVSKLIGSPPGYVGYDEGGQLTE KVRRHPYSVILFDEIEKAHPDVFNALLQILEDGRLTDSQGRTVKFANTIIIMTSNLGAKLLLNGNKRIGFDFAGKGGEPE QNDDRNLYGGRSYQEAADLVIAEAKRTFNPEFINRIDEILFFKMLDKKAMRQIVDLMLKGLAKRISELGIKLTVTDAAAD RLAVEGYDSLYGARPLRRTIQNRVEDEFSQAMLDGTIKKGDVAEVDIVKQGKDVKFVVRPQGSERTTESKGSDSDSDASA DSAAPTNQADKSAGGSIEHPYQVSSDSSAEPKDTAKDDKSKSED |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 5e-160 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_003474803.1 | negative regulator of genetic competence ClpC/MecB | VFG0079 | Protein | 9e-175 | 53 |
| clpC | YP_003474803.1 | negative regulator of genetic competence ClpC/MecB | VFG0080 | Protein | 9e-146 | 50 |
