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Name : HMPREF0868_0494 (HMPREF0868_0494) Accession : YP_003474824.1 Strain : Clostridiales genomosp. UPII9-5 Genome accession: NC_013895 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : 3.1.21.3 Position : 1318535 - 1321603 bp Length : 3069 bp Strand : - Note : identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348 DNA sequence : ATGCCAGGATTTTATACAGAAGCGGACTATGAGAGTTCGATAATAGAATTATTCCAAAATATGGGATACAGGTATGTCTA TGCACCAGATTTGGAGCGTGACTTTCATAGCCCCTTATACGAAGAGGAATTACTGTCAGCGTTACATAGGCTAAATCCAA AAATGCCGGAAGATGCTATAGCCGATGCACTGTTCAAATTGAAAAATTTTGAAAATGCTGAGCTTGTCCAGAAGAATGAA CTATTTATGGACTATCTTCAACACGGAATTGAAGTTAGGTACTTCGTGGATGGCGAGGAACGCTTCGGCCTCGTATATAT TGTCGACTATAAAAATCCTGATAATAACTCCTTTGTTGTAGCAAATCAGTGGACTTTTATTGAGAACAGCAATAAACGTC CGGATGTGCTTCTGTTTTTAAATGGCATGCCAGTTGTACTTGTTGAGCTGAAATCGCCATCTCGTGAAGAGACTGATGCT TCAGAGGGCTATCTGCAGATTAGAAACTATATGCAAGAAATCCCGTCGATGTTTATATATAACTGCATTTGTGTTATTAG CGATCATCTGACTAGCAAAGCCGGCACCATCACTTCCGGTGAGGATCGCTTCATGGAATGGAAAACAAAAGACGGTAGTT ATGAGAATACACAATACGCTCAGTTTGACACATTCTTTGAGGGAATGTTTGAAAAAGAGCGTTTGCTTGACATCATCAAA AACTTTATTTGTTTCTCCAATGACGGGTTGAATAAGTTTAAGATTCTGGCGGGTTATCACCAGTATTTTGCAGTTCGAAA GGCTATCGAATCTACAAAAAACGCAACAGTCACTGACGGTAAAGGTGGCGTATTCTGGCATACACAGGGCAGCGGGAAAT CTCTATCTATGGTTTTTTATGCCCACCTTCTGCAGGAAGTATTGGATAGCCCAACTATCGTAGTAATTACAGACCGTAAC GATCTTGATGATCAGCTTTACGGACAGTTTGCTAAGTGCAAAGATTTTCTACGTCAGAATCCGGTACATGCTACCTGTAG GAAATTGACAGAGACTTCCGGTAAAAATGATATCGGATTGAAAGACTGGCTGGAAGGCAGGCAGGCAAACGGCATCATTT TTACAACGATGCAGAAATTTGAAGAATCATCAGAGCCACTTTCTAAGCGCCGTAACATCATCGTGATGGCTGATGAAGCG CATCGTAGCCAGTATGGGTTGAAAGAAAAAATTGACGCTAAAACCGGTGAGATAAAGACTGGAACGGCACGTATCATACG TGACAGTCTGCCAAACGCTACATATATTGGCTTTACTGGAACACCTATTGCCGCAAAAGATAGAAATACTCGCGAAGTGT TCGGTGACTACATCGATATTTACGATATGACGCAAGCTGTAGAAGACGGTGCTACAAGACCGGTCTATTACGAAAGCCGC GTTATTAAGCTAAAATTTGATGAGCCTACGCTTCATCTGATCGATCAGGAATACGACATTATGGCAAATAATGCTGACCC TGAAGTGATTGAGAAAAGCAAGAAAGAGCTTAGCCAGATGGATGCTGTTCTAGGCAATGACGCTACTATTGATTCTCTTA CTAACGACATTATCAGCCACTACGAAAACTATCGAGAAAACCTGCTAACCGGAAAAGCAATGATAGTTGCTTATTCTCGC GAAATCGCTATGAAAATTTACAAGCGTATTCTTGAGGTTCGCCCAAGCTGGCAGAAAAAGGTTAAGGTCGTAATGACCGA GAGTAATAAAGATCCTGAAGAGTGGCGTGCTGTTATTGGAAATAAGCATCACAGGGATGAGCTTGCTAAAGAATTCAAAG ATAATAATAGCGAGATGAAAATCGCCATAGTTGTTGATATGTGGCTTACAGGATTTGATGTTCCTTCTCTTGCAACAATG TATGTCTATAAGCCAATGCAGGGATATAACTTGATGCAAGCCATTGCCCGCGTCAATCGTGTTTTTAAGGATAAAGAAGG CGGTTTGATTGTTGACTACGTGGGCATAGCGTCAGCATTGAAACAAGCCATGAATGACTATACAGCTCGCGATAAAAAGA ACTATGGGGATACCGATATTGCTAAAGTTGCATATCCAAAGTTCCTTGAGAAGCTTTCCATTTGCCGTGATCTATTCCAC GGATATGATTATTCCAAGTTTACGAATGGTACTGATCTAGAACGCTCAAAGACTATCACCGGTGCAGTTAACTTTATTGT GAGCATTGACAAGGAAAGAGAACGTGAAGACTTCATCAAAGAGGCACTGCTATTGCATCAGGCTTTGTCGCTCTGCTCAT CACTTGTAGAGAGAGGCCTTCGAGTAGAAGCTGCATTCTTTGAATCTGTTCGCGTGCTTGTTATGCGCTTAATAAATCAG GGTGAAGATAAAAAAATATCTCTGCCGGAAATGAACGCTCGCATCAATGAACTTCTGAAATCCAGCATCAAGAGTGATGG CGTTATTAATTTGTTCTCTGATGTTAAAGAAGAATTCTCCCTATTTGATCCTAAATTTCTTGAGGAAATTTCAAAGATGA AGGAGAAAAACCTTGCTGTTGAACTTTTGAAAAAATTGATTGCTGAGCAGATACAGATCTATAGACGATCAAATGTAGTC AAATCCGAGAAGTTCAGCGAAATTATTCAAGGTGTTATGAATCGATATCTTAATGGGATGCTGACAAATGAAGAGGTTAT TGAAGAGCTTTTGAAAATGGCACAGCAAATTCAAGATGCCCACAAGGCTGGAGATGAACTTGGCCTTTCTGAAGATGAGC TAGCCTTTTATGACGCATTAACCAAACCACAGGCTATTAAGGATTTCTATGAAAATGATGAGCTGATTGCCATCACTAAA GAACTTACTGAAACACTTCGTAAGAATCGTACGATTGATTGGCAAAAACGTGATTCCGCACGTGCTAAAATGCGCATGAT GATTAAAAGGCTTCTCAAACAGCACCGCTATCCACCTGAGGGTATGGAGGATGCTGTCAAAACAGTAATGACTCAGTGTG AGCTGTGGACGGATAGAACAGATCTATAG Protein sequence : MPGFYTEADYESSIIELFQNMGYRYVYAPDLERDFHSPLYEEELLSALHRLNPKMPEDAIADALFKLKNFENAELVQKNE LFMDYLQHGIEVRYFVDGEERFGLVYIVDYKNPDNNSFVVANQWTFIENSNKRPDVLLFLNGMPVVLVELKSPSREETDA SEGYLQIRNYMQEIPSMFIYNCICVISDHLTSKAGTITSGEDRFMEWKTKDGSYENTQYAQFDTFFEGMFEKERLLDIIK NFICFSNDGLNKFKILAGYHQYFAVRKAIESTKNATVTDGKGGVFWHTQGSGKSLSMVFYAHLLQEVLDSPTIVVITDRN DLDDQLYGQFAKCKDFLRQNPVHATCRKLTETSGKNDIGLKDWLEGRQANGIIFTTMQKFEESSEPLSKRRNIIVMADEA HRSQYGLKEKIDAKTGEIKTGTARIIRDSLPNATYIGFTGTPIAAKDRNTREVFGDYIDIYDMTQAVEDGATRPVYYESR VIKLKFDEPTLHLIDQEYDIMANNADPEVIEKSKKELSQMDAVLGNDATIDSLTNDIISHYENYRENLLTGKAMIVAYSR EIAMKIYKRILEVRPSWQKKVKVVMTESNKDPEEWRAVIGNKHHRDELAKEFKDNNSEMKIAIVVDMWLTGFDVPSLATM YVYKPMQGYNLMQAIARVNRVFKDKEGGLIVDYVGIASALKQAMNDYTARDKKNYGDTDIAKVAYPKFLEKLSICRDLFH GYDYSKFTNGTDLERSKTITGAVNFIVSIDKEREREDFIKEALLLHQALSLCSSLVERGLRVEAAFFESVRVLVMRLINQ GEDKKISLPEMNARINELLKSSIKSDGVINLFSDVKEEFSLFDPKFLEEISKMKEKNLAVELLKKLIAEQIQIYRRSNVV KSEKFSEIIQGVMNRYLNGMLTNEEVIEELLKMAQQIQDAHKAGDELGLSEDELAFYDALTKPQAIKDFYENDELIAITK ELTETLRKNRTIDWQKRDSARAKMRMMIKRLLKQHRYPPEGMEDAVKTVMTQCELWTDRTDL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 42 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 42 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 42 |
