Gene Information

Name : HMPREF0868_0562 (HMPREF0868_0562)
Accession : YP_003474885.1
Strain : Clostridiales genomosp. UPII9-5
Genome accession: NC_013895
Putative virulence/resistance : Resistance
Product : putative bacteriocin ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1254394 - 1255071 bp
Length : 678 bp
Strand : -
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGGAAGAGAAACATTTACAATATTGTTTGCAGAACGTTAGTAAAAAATATGGCTCGCATTTAGTATTGAATAAAGTTAA
TTTAAACATATATGAGGGCGATCTCATATGCATATTCGGCAAAAGTGGCAGTGGCAAGAGTACTTTACTAAGCATTATGG
GACTGCTTGACACTTACAATTCAGGTAGAATTGAATGTTTTGGTCAGGTTGACCCGATTAAAAAAGCTAAAGCCTGTGAA
TTGTTGCGGCGGATGAACATAGCCTATTTGTTCCAAAATTTTGCCTTGGTAGAAAAAATGACGGTAGTTGAAAATATGCT
CTTGGCGTTAAAATATAATCCGGAAAAAAATAAAGAGAAATTAATTGACTTGGTTAAGCAGCCGTTGGATGAAATGGGGG
TGCTGGACAAACTTAGGTCTAAGATATATGAACTTTCCGGTGGTGAAGCTCAACGGGTTGCTCTGGCCAGAAACATGGTT
AAACCGTTTGACATCTTGCTAGCAGATGAGCCTACAGGGTCTCTGGATAATGAAAATAAGCAAATTGTGATGAACACATT
GGTTAAACTTAATAATGCAGGCAAGACTGTTGTAGTAGTAAGTCATGACATGGATTTTAAATATTTAGCTAAACGAAATT
TTTTGATCGAAAATGGAGAACTAAAGGAAATTCCATAG

Protein sequence : 
MEEKHLQYCLQNVSKKYGSHLVLNKVNLNIYEGDLICIFGKSGSGKSTLLSIMGLLDTYNSGRIECFGQVDPIKKAKACE
LLRRMNIAYLFQNFALVEKMTVVENMLLALKYNPEKNKEKLIDLVKQPLDEMGVLDKLRSKIYELSGGEAQRVALARNMV
KPFDILLADEPTGSLDNENKQIVMNTLVKLNNAGKTVVVVSHDMDFKYLAKRNFLIENGELKEIP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 7e-29 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0868_0562 YP_003474885.1 putative bacteriocin ABC transporter NC_012469.1.7686946. Protein 5e-32 47
HMPREF0868_0562 YP_003474885.1 putative bacteriocin ABC transporter CP003583.1.gene613.p Protein 6e-21 41