Gene Information

Name : Thal_0390 (Thal_0390)
Accession : YP_003473152.1
Strain : Thermocrinis albus DSM 14484
Genome accession: NC_013894
Putative virulence/resistance : Virulence
Product : lysyl-tRNA synthetase
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG1190
EC number : -
Position : 383726 - 385435 bp
Length : 1710 bp
Strand : -
Note : KEGG: dvl:Dvul_0888 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); tRNA synthetase class II (G H P and S); nucleic acid binding OB- fold tRNA/helicase-type

DNA sequence :
ATGGAAAGGTCTCGTCTGGAAAAACTTCTCCGCCTAAAAGAACAAGGAAAAGCCTACCCTTACCGGTATCCCACCAGCGG
ATCTATAGGAGACATAAGAAGAGAGTGGGAAGAAGATCCCAAAGGTGAGAACCTGAGAGTGCGCGGAGTAGTCAAGAGGG
TGTCCGCTTTACAGGAAGGCTCCTTCTACGTGAGACTGGCAGATCCCGAAGGTGGTGAGCTGGTGGTCATCACCACCGAA
AGCCTTCAGACAGGAGAGGAGTGTGTTCTGGAAGGTAGTCTCGTAAGAAAGGATGGAAAACTCACCCTCCTGCAGGCGTG
CAGATCCCAGGACCCTGCCCTAAGTGTAAAGGAGATCCTCCGCAGATACGACAAAGATCCGGACAACAGAGAAGTATCGG
TAGCGGGAAGACTTATAAGCCTCAGGTTTATGGGTAAAGCGGTTTTTGGGCATCTACAGGACGCTACCGGAAAGATACAG
ATATACATAAGGAAGGATCTGCTGGGGGAAGAGGCCTTTAAAGAGTTTGAGGATACTGTGGATCCCGGGGATGTCATCGG
CGTTAAAGGTAAGCTCTTTAGAACAAGTACCGGAGAGCTTACGGTGGAGGTTCAGGAATACACCCTGTTGGCAAAGAGCC
TTCACCCTCTACCCGAAAAGTGGCACGGTCTTAAAGATGTGGAGGTACGCTACCGCCAGAGGTATCTGGATCTGATAGCT
AACCCCAAGACCAGGGAAATCCTTTTACTCCGATCAAGGGTTATCACTGAGGTGAGGAGGTTTCTGGAGAGTAAGGGTTT
TGTGGAGGTGGAAACACCTATCCTGCAGCCTGTGGCTTCAGGAGCTAACGCCAAACCTTTTGTTACCTACCACAACTACT
TAGAACAGAACCTTTATCTGCGCATAGCGCCTGAACTTTACCTGAAGAGGTTGATAGTAGGTGGTCTTCTGAAGGTTTAC
GAACTAGGAAAGAACTTCCGCAACGAGGGTGTAGACACCACCCACAACCCAGAGTTCACCATGGTGGAATTTTACTGTGC
TTACTGGGATTACAAAGACCTCATGGCCTTTACAGAGGAACTCTTCACCCACATACTCACTGAGGTGATGGGAGGTCTTA
CCATAACCTATCAAGGCAGACTGTTGGATTTCACACCCCCCTACCGTGTTTACCGTTACTTTGATCTTCTGAAGGAGAAA
ACAGGTAAGGATAAGGACTTTTTCCTCAGAGACGAGGAAGGTGTGAGGAAGCTGGCGCTGGACATAGGTATACCCAACGC
GGAAAAACTGACCCACGCTAAGCTTATTGACAAGATATTTGACAGGTTGGTGGAAGAGGAACTTTGGGGACCATGCTTTG
TTATAGACTTCCCTGCCCTTCTTTCTCCCCTTGCCAAGAGACACAGGGAGGATCCTGATCTGGTAGAAAGATTTGAGCTG
TTTGTGGCAGGCAGTGAGCTGGCCAACGCCTACTCGGAACTTAACGACCCTATAGAGCAGAGAGAAAGATTTTTACAACA
GCTGAGAGAAAAGGAGATGGGTGACGAAGAGGCTATGGAGCTGGACGAGGACTTTGTAAAAGCTCTTGAGTACGGTATGC
CTCCCACGGCAGGAGAGGGGATAGGTATAGACAGACTGGTGATGATACTGGCTGACGTTGATTCTATAAGAGAGGTGATC
CTGTTTCCCGCTCTGAGGAGAAGAGAATGA

Protein sequence :
MERSRLEKLLRLKEQGKAYPYRYPTSGSIGDIRREWEEDPKGENLRVRGVVKRVSALQEGSFYVRLADPEGGELVVITTE
SLQTGEECVLEGSLVRKDGKLTLLQACRSQDPALSVKEILRRYDKDPDNREVSVAGRLISLRFMGKAVFGHLQDATGKIQ
IYIRKDLLGEEAFKEFEDTVDPGDVIGVKGKLFRTSTGELTVEVQEYTLLAKSLHPLPEKWHGLKDVEVRYRQRYLDLIA
NPKTREILLLRSRVITEVRRFLESKGFVEVETPILQPVASGANAKPFVTYHNYLEQNLYLRIAPELYLKRLIVGGLLKVY
ELGKNFRNEGVDTTHNPEFTMVEFYCAYWDYKDLMAFTEELFTHILTEVMGGLTITYQGRLLDFTPPYRVYRYFDLLKEK
TGKDKDFFLRDEEGVRKLALDIGIPNAEKLTHAKLIDKIFDRLVEEELWGPCFVIDFPALLSPLAKRHREDPDLVERFEL
FVAGSELANAYSELNDPIEQRERFLQQLREKEMGDEEAMELDEDFVKALEYGMPPTAGEGIGIDRLVMILADVDSIREVI
LFPALRRRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 5e-104 49
lysS YP_005163386.1 lysyl-tRNA synthetase Not tested Not named Protein 4e-78 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Thal_0390 YP_003473152.1 lysyl-tRNA synthetase VFG1668 Protein 3e-104 49