Gene Information

Name : SLGD_00888 (SLGD_00888)
Accession : YP_003471153.1
Strain : Staphylococcus lugdunensis HKU09-01
Genome accession: NC_013893
Putative virulence/resistance : Resistance
Product : beta-lactamase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG2367
EC number : 3.5.2.6
Position : 950710 - 951555 bp
Length : 846 bp
Strand : +
Note : -

DNA sequence : 
TTGAAAAAGTTAATATTTTTAATTGTAATTGCTTTAGTTTTAAGTGCATGTAATTCAAACAGTTCACATGCCAAAGAGTT
AAATGATTTAGAAAAAAAATATAATGCTCATATTGGTGTTTACGCTTTAGATACTAAAAGTGGTAAGGAAGTAAAATTTA
ATTCAGATAAGAGATTTGCCTATGCTTCAACTTCAAAAGCGATAAATAGTGCTATTTTGTTAGAACAAGTACCTTATAAT
AAGTTAAATAAAAAAGTACATATTAACAAAGATGATATAGTTGCTTATTCTCCTATTTTAGAAAAATATGTAGGAAAAGA
TATCACTTTAAAAGCACTTATTGAGGCTTCAATGACATATAGTGATAATACAGCAAACAATAAAATTATAAAAGAAATCG
GTGGAATCAAAAAAGTTAAACAACGTCTAAAAGAACTAGGAGATAAAGTAACAAATCCAGTTAGATATGAGATAGAATTA
AATTACTATTCACCAAAGAGCAAAAAAGATACTTCAACACCTGCTGCTTTCGGTAAGACTTTAAATAAACTTATCGCAAA
TGGAAAATTAAGCAAAGAAAACAAAAAATTCTTACTTGATTTAATGTTAAATAATAAAAGCGGAGATACTTTAATTAAAG
ACGGTGTTCCAAAAGACTATAAGGTTGCTGATAAAAGTGGTCAAGCAATAACATATGCTTCTAGAAATGATGTTGCTTTT
GTTTATCCTAAGGGCCAATCTGAACCTATTGTTTTAGTCATTTTTACGAATAAAGACAATAAAAGTGATAAGCCAAATGA
TAAGTTGATAAGTGAAACCGCCAAGAGTGTAATGAAGGAATTTTAA

Protein sequence : 
MKKLIFLIVIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPYN
KLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIEL
NYYSPKSKKDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASRNDVAF
VYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKSVMKEF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
blaZ YP_253679.1 beta-lactamase Not tested ¥ÕSh1 Protein 1e-111 100
blaZ YP_005754040.1 beta-lactamase Not tested Type-XI SCCmec Protein 1e-82 68

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SLGD_00888 YP_003471153.1 beta-lactamase NC_002952.2859819.p0 Protein 6e-112 100
SLGD_00888 YP_003471153.1 beta-lactamase NC_005054.2598287.p0 Protein 6e-112 100
SLGD_00888 YP_003471153.1 beta-lactamase M60253.gene.p01 Protein 6e-112 100
SLGD_00888 YP_003471153.1 beta-lactamase NC_007931.3978604.p0 Protein 6e-110 99
SLGD_00888 YP_003471153.1 beta-lactamase NC_003140.1122765.p0 Protein 6e-110 99
SLGD_00888 YP_003471153.1 beta-lactamase NC_005951.2853409.p0 Protein 1e-109 98
SLGD_00888 YP_003471153.1 beta-lactamase NC_010063.5774822.p0 Protein 7e-110 98
SLGD_00888 YP_003471153.1 beta-lactamase NC_005011.2598316.p0 Protein 1e-109 98
SLGD_00888 YP_003471153.1 beta-lactamase NC_005127.2610354.p0 Protein 9e-110 98
SLGD_00888 YP_003471153.1 beta-lactamase NC_010066.5774791.p0 Protein 1e-104 97
SLGD_00888 YP_003471153.1 beta-lactamase FR823292.1.gene2.p01 Protein 5e-83 68
SLGD_00888 YP_003471153.1 beta-lactamase HE993884.1.gene8.p01 Protein 3e-69 67