|
Name : SLGD_00006 (SLGD_00006) Accession : YP_003470281.1 Strain : Staphylococcus lugdunensis HKU09-01 Genome accession: NC_013893 Putative virulence/resistance : Virulence Product : beta-hemolysin Function : - COG functional category : R : General function prediction only COG ID : COG3568 EC number : 3.1.4.3 Position : 3227 - 4213 bp Length : 987 bp Strand : + Note : - DNA sequence : ATGTATTTGGATTGGCAACGTAAATGTATCATAACTACGATGGTCGTATTGAGCAGTTTATTATTAGTATTTTCATCAAT TACATATGCTAGCGAACGCAATACTGAAGACAGCCTTAAAATTACAACACATAATGTTTATTTCTTGCCTACAGCAATAT ATCCTAATTGGGGGCAATCTCAGCGCGCTGATTTAATTTCAAAAGCGGATTATATCCAAGGTCAAGACGTTGTAATTTTA AATGAATTATTTGATCACAAGGCATCAAATCGACTTTTAACAAATTTAAAATCACAATATCCTTATCAAACACCAATTGT TGGTCAAGGTACAGAAGGTTGGCAAAAGACATCTGGATCTTATAGAAAATTGAAAAAAGTGAGCGGTGGTGTTGGTATCG TGAGTAAATGGCCAATCGTACAACAAGAACAACATATTTACAAAAATGGTTGTGGCGCTGACAGTGTAGGCAATAAAGGC TTTGCATACATTAAAATTAATAAAAACGGCAAATATCAACATATTATTGGAACGCACCTTCAAGCAGAAGATCCAGTATG TATGAAAGGGAAAGATCAAACGATTAGACAGAGTCAAATGGAAGAAATCAAACAATTTATCAAAGATAAAAATATTCCAA AAGATGAACCCGTATATATTGGCGGTGATTTAAATGTCATTAAAGGTTCAGCGGAATATCAGAAAATGTCTGATAACTTG AATGTTTCAATGCCTAAACAATACGAGGGCAACGCGTATAGTTGGGATACACAAACTAACGGCATTGCGAATTATAATTA TCCTAAATTAGAGCCGCAACATTTAGATTATATTTTACTAGATCGAGACCATGCACAACCAAGTTCATGGCATAATCATA CACATAAAGTGAAATCACCAGAATGGTCTGTAAAATCTTGGGGTAAGACTTACCGATACAATGACTATTCAGACCATTAT CCAGTTTCTGCATATGCAGCGAATTAA Protein sequence : MYLDWQRKCIITTMVVLSSLLLVFSSITYASERNTEDSLKITTHNVYFLPTAIYPNWGQSQRADLISKADYIQGQDVVIL NELFDHKASNRLLTNLKSQYPYQTPIVGQGTEGWQKTSGSYRKLKKVSGGVGIVSKWPIVQQEQHIYKNGCGADSVGNKG FAYIKINKNGKYQHIIGTHLQAEDPVCMKGKDQTIRQSQMEEIKQFIKDKNIPKDEPVYIGGDLNVIKGSAEYQKMSDNL NVSMPKQYEGNAYSWDTQTNGIANYNYPKLEPQHLDYILLDRDHAQPSSWHNHTHKVKSPEWSVKSWGKTYRYNDYSDHY PVSAYAAN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hlb | NP_646757.1 | truncated beta-hemplysin | Not tested | ¥ÕSa3 | Protein | 1e-69 | 55 |
| unnamed | CAA70683.2 | sphingomyelinase-c | Virulence | LIPI-2 | Protein | 2e-78 | 55 |
| hlb | NP_375112.1 | hypothetical protein | Not tested | ¥ÕSa3 | Protein | 1e-69 | 54 |
| truncated-hlb | NP_372527.1 | hypothetical protein | Not tested | ¥ÕSa3 | Protein | 7e-70 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SLGD_00006 | YP_003470281.1 | beta-hemolysin | VFG0674 | Protein | 9e-79 | 55 |
| SLGD_00006 | YP_003470281.1 | beta-hemolysin | VFG1798 | Protein | 3e-76 | 54 |
