|
Name : SLGD_00057 (SLGD_00057) Accession : YP_003470332.1 Strain : Staphylococcus lugdunensis HKU09-01 Genome accession: NC_013893 Putative virulence/resistance : Unknown Product : Osmosensitive K+ channel histidine kinase KdpD Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG2205 EC number : - Position : 54688 - 57342 bp Length : 2655 bp Strand : - Note : - DNA sequence : ATGGAAAGTTCATATAAAAAAAGAGGAACTCTGACCATTTATTTAGGTTATAGCCCTGGCGTTGGGAAAACGTATGAAAT GCTTTCAAATGGTATCGACCAATATAAAGAAGGGGTGGATGTTAAGATCGGTTATATTGAGCCACATCAACGTCCTGAGA CAAATGCGCTTGCCAAACAACTTCCTGAAATTACAACTTCTAGCCATAAATTCGGTAGCCATATGTTTCAGTTTATCAAT GTTGAAAGAATTATTGAGGCTCAACCCGATATCGTATTGATTGATGAACTCGCACACACTAATATTTCTAAAAATCGTCA TTTGAAAAGATATATGGATATTGAAGAAATACTGTCTCACGGTATCGATGTGTGGACAACACTAAATATCCAACATATAG AAAGTTTAAGTGGACAAATTGAATTAATGACAGGTATTCAAGTGACAGAACGCGTACCCGATCAATTTATTATGTCGGCA GATGCATTTGAAGTTGTAGATATTTCGCCGAATATGCTGATACAACGTTTAAAAGCTGGAAAAGTATATAAAAAAGAACG TTTAGAAACAGCGTTTTCCAACTTTTTTTCTTATGAAAATTTGACTAGATTGCGTGAACTTGCGCTCAGAACTGTAGCAG ACATTATGAGTCAAAAAGAACAACAATGTAATACAAAACATACAGATATCACGCCTCATATTGCCGTTGCTGTCAGTGGT AGTATTTATAACGAGCGCGTTATTCGAGAAGCAAGACGTTCTGCCTATAAAGAACATGCCAAATTTACAGCTATTTATAT CGACACCTTTGAGACACCTTCAGAAAGCAAAATACAAGACCATTACGTGCATAAAAATCTTATGCTCGCCAAATCGTTAG GTGCAGAGATTAAAGTTCTTTATGCACAAGACGTTGCAAAAGCATTAACAGATTGGTGCGATAGCGCATTTGTTACTAAG TTAGTTCTTGGGCAATCAGAAAACCCAAAATGGAAACATTATTTTAAAAAATCACTTATTGAAGAAATTAACCATGCGCC GCATTATTTCAAATTAGAGATTGTGCCTATCTATTATATAAACTCAAATAAGCAAGAACGTACACAATCAATGAATAAAC CATCTTATCAAATAGCATTATCTGTAGATATAATGAAAATGCTTATTATTCAAACATTTTGTGTTCTCCTTGGTATGTGG ATTTACACAATTGATAAAAATGAATCAAGCGCAATTATTTTACTATTATTCTTTATTGGTATTATCTTATTATCCATATG GACGCAATCTTATCTCATTGGATTCTTTACATCGATATTAAACGTTTTTATTTTTAATTATTTCTTTACCGTGCCAAGAT TCACTCTAGAAATGTATCGATTTGAATACCCTATTACATTTGTAATCAGTATTTTTGCAAGTATTTTTACGAGTGCCATT TTAAAAAATTTAAAGTATCAGCACTCATTAACAGAGCGCCAATTATATCGTACTGATATTATGTTACAGTTTAATCAATC TATTAAAGAATCTTATTCTATAATGAAACTGTTAAATATAGCTGGTGAACAAATCCATCAATTGTTACATCAAAATGTTA CGGTGTTTTTAGTCGAATCAAAAAAAGTAGTCAAATCATCTTCATTTGGACATCCATCATTTAAAAACACAAAAAATATG GAAGATGTAGAAGATGCAGAAACATTGACTTGGGTCATCGAAAACGAACATCGTGCCGGAAGACTTACCGATACCTTCCC CGGAAGCAAATATCTATGTATACCTATAGGTAGTAATCCCGTAAAAGGAATCGTGTCCATTCAATTTGATGATAAAGATT ATATCGATATGTATGACAATTCAATATTAGACTCTATGTTAAATGATTTAATGCTGGCAATAGAAAATGTATATTTACTT AAACAAACAAGACAATCGATGTTAACAGCTGAGCGCGAAGCAACACGCTCTAATTTCTTACATTCTATTTCACATGATAT ACGGACACCACTCACATCTATTATTGGAAACTTAGATGTGTTGAAATTTCACAGTAAGAGCTTAGATAACGCTGAAAAAT TAAAACTATTAACTGCTTCATATAAGGAAGCACAATACCTGTATACACTTGTTACTAATATTTTATCTCTCACTAAGTTG GAAAGTTCTGATATAAAAGTAAAACGGACGGCTTATCTTATAGAAGAACTGTTAGAAGAATTCGAGCAAGGGTTGATTCG CAGACACCAAAATCAAAAGGTAACGATTGAAACCGAAGATACCATGGCATTCGTTCACATTGATAGCAAACTAATACTGC AAGTTTTATTTAATCTCGTTGATAACGCGTTGAAACACTCTGGGACCACTTCAGAAATTAAACTTTGCATTCATCTACAG CCATCTCGTGTACGCTTTGAAATGATTGATTTTGGGAAAGGGATTCCTGAAGAAGAACGACATTTAATTTATAAACCTTA TTATTCAGGGGATTATTTTAAAGACAATAAAAAAGACAGCTTAGGACTGGGACTATATTTAGTGCAACTCATTTTAAAAC AACATGATAGCCAATTAGAATACCAACCTAATCATCCACATGGCAGTATTTTTTATTTTTACTTAGATATAGATCAAATA GATATGAAAGGGTGA Protein sequence : MESSYKKRGTLTIYLGYSPGVGKTYEMLSNGIDQYKEGVDVKIGYIEPHQRPETNALAKQLPEITTSSHKFGSHMFQFIN VERIIEAQPDIVLIDELAHTNISKNRHLKRYMDIEEILSHGIDVWTTLNIQHIESLSGQIELMTGIQVTERVPDQFIMSA DAFEVVDISPNMLIQRLKAGKVYKKERLETAFSNFFSYENLTRLRELALRTVADIMSQKEQQCNTKHTDITPHIAVAVSG SIYNERVIREARRSAYKEHAKFTAIYIDTFETPSESKIQDHYVHKNLMLAKSLGAEIKVLYAQDVAKALTDWCDSAFVTK LVLGQSENPKWKHYFKKSLIEEINHAPHYFKLEIVPIYYINSNKQERTQSMNKPSYQIALSVDIMKMLIIQTFCVLLGMW IYTIDKNESSAIILLLFFIGIILLSIWTQSYLIGFFTSILNVFIFNYFFTVPRFTLEMYRFEYPITFVISIFASIFTSAI LKNLKYQHSLTERQLYRTDIMLQFNQSIKESYSIMKLLNIAGEQIHQLLHQNVTVFLVESKKVVKSSSFGHPSFKNTKNM EDVEDAETLTWVIENEHRAGRLTDTFPGSKYLCIPIGSNPVKGIVSIQFDDKDYIDMYDNSILDSMLNDLMLAIENVYLL KQTRQSMLTAEREATRSNFLHSISHDIRTPLTSIIGNLDVLKFHSKSLDNAEKLKLLTASYKEAQYLYTLVTNILSLTKL ESSDIKVKRTAYLIEELLEEFEQGLIRRHQNQKVTIETEDTMAFVHIDSKLILQVLFNLVDNALKHSGTTSEIKLCIHLQ PSRVRFEMIDFGKGIPEEERHLIYKPYYSGDYFKDNKKDSLGLGLYLVQLILKQHDSQLEYQPNHPHGSIFYFYLDIDQI DMKG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kdpD | NP_370595.1 | sensor protein KdpD | Not tested | Type-II SCCmec | Protein | 0.0 | 80 |
| kdpD | NP_373307.1 | hypothetical protein | Not tested | Type-II SCCmec | Protein | 0.0 | 80 |
| SH0032 | YP_251947.1 | hypothetical protein | Not tested | SCCmec | Protein | 0.0 | 80 |
| kdpD | YP_190032.1 | sensor histidine kinase KdpD | Not tested | Type-II SCCmec | Protein | 0.0 | 80 |
| SAR0069 | YP_039537.1 | sensor kinase | Not tested | Type-II SCCmec | Protein | 0.0 | 80 |
