Gene Information

Name : SLGD_00335 (SLGD_00335)
Accession : YP_003470610.1
Strain : Staphylococcus lugdunensis HKU09-01
Genome accession: NC_013893
Putative virulence/resistance : Virulence
Product : capsular polysaccharide synthesis enzyme Cap8M
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG2148
EC number : -
Position : 351310 - 351867 bp
Length : 558 bp
Strand : +
Note : -

DNA sequence : 
GTGAAAAGAGCTTTCGACTTATTTTGCTCAATATATGGTTTAATTGTAGCAGGGCCTTTTTTACTTATTATAGCGTTACT
AATTAAATTAGAGTCACCAGGCCCAGCTATTTTTAAGCAAAAAAGACCAACACTAAATAATGAGCTTTTTAATATCTATA
AATTTAGATCGATGAAAATGGATACTCCTAATGTAGCAACAGATTTAATGGATCCAGCAGATTTTATTACTAAAACTGGT
AAATTTATTAGAAAAACATCAATTGATGAGTTACCTCAATTACTAAACGTGTTAAAAGGTGATATGTCCATTGTAGGTCC
TAGACCAGCACTTTATAATCAATATGAACTTATTGAAAAAAGAACAAAAGTAAATGTTCATACAATACGACCGGGTGTTA
CTGGGTTAGCGCAAGTAATGGGTAGAGATAATAATACTGACGATCAAAAAGTAATGTTTGACAAATACTATTTAGAAAAC
CAATCATTTTTATTAGACATGTATATTATTTATAAAACAGTCATTAATACAATCTCATCAGAAGGTGTTTCTCACTAA

Protein sequence : 
MKRAFDLFCSIYGLIVAGPFLLIIALLIKLESPGPAIFKQKRPTLNNELFNIYKFRSMKMDTPNVATDLMDPADFITKTG
KFIRKTSIDELPQLLNVLKGDMSIVGPRPALYNQYELIEKRTKVNVHTIRPGVTGLAQVMGRDNNTDDQKVMFDKYYLEN
QSFLLDMYIIYKTVINTISSEGVSH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1N AAL26667.1 type 8 capsule synthesis gene Virulence SCCcap1 Protein 3e-65 75
SSP0070 YP_300160.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 2e-63 71

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SLGD_00335 YP_003470610.1 capsular polysaccharide synthesis enzyme Cap8M VFG1309 Protein 6e-73 83
SLGD_00335 YP_003470610.1 capsular polysaccharide synthesis enzyme Cap8M VFG1369 Protein 3e-31 49