Gene Information

Name : SLGD_02175 (SLGD_02175)
Accession : YP_003472390.1
Strain : Staphylococcus lugdunensis HKU09-01
Genome accession: NC_013893
Putative virulence/resistance : Virulence
Product : ferrichrome ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2255924 - 2256721 bp
Length : 798 bp
Strand : -
Note : TC 1.B.14.1.4

DNA sequence : 
ATGAGTCGCTTGAATGGACAACAAGTTGAAATTGGATATGGTGATCATACGATAATTAATAACCTTGATGTAGAAATTCC
TGATGGTAAAATAACATCAATTATTGGACCAAATGGATGTGGGAAATCTACGTTATTGAAAGCTTTATCTCGATTACTGT
CGATAAAAAAAGGACAAATTATACTTGATGGTGAAAGTATTCATACACAGTCAACAAAAGAAATTGCTAAAAAGATTGCA
ATCTTACCACAATCTCCAGAAGTAGCTGATGGTTTAACGGTAGGTGAACTTGTTTCATATGGCCGTTTTCCGCATCAGAA
AGGATTTGGTCGTCTTTCAGCTGAAGATAAAAAAGAAATTGATTGGGCATTAACTGTAACAGGAACATATGACTTCCGTC
ACCGCTCAATTAATGACTTAAGTGGTGGACAAAGACAACGCGTATGGATTGCAATGGCCTTAGCACAAAAAACCGACATT
ATATTTTTGGATGAACCTACAACATACTTAGATATTTGTCACCAGTTAGAAATTTTAGAACTTGTTCAGCGTTTAAACGA
AGAACAAGGGTGCACCATTGTGATGGTCTTACATGATATTAACCAGGCTATTCGCTTTTCAGACCATTTGATTGCTATGA
AAGATGGGGAAATCGTCGCAAATGGTACAACTAAAGAGGTACTTACAAAGCAAATCTTAGAACAGGTGTTTAATATTGAT
GTTGTGTTAAGTGAAGATCCACGTACAGGCAAACCATTATTAGTTACCTATGATTTGTTTAGTAAAACATACTCATAA

Protein sequence : 
MSRLNGQQVEIGYGDHTIINNLDVEIPDGKITSIIGPNGCGKSTLLKALSRLLSIKKGQIILDGESIHTQSTKEIAKKIA
ILPQSPEVADGLTVGELVSYGRFPHQKGFGRLSAEDKKEIDWALTVTGTYDFRHRSINDLSGGQRQRVWIAMALAQKTDI
IFLDEPTTYLDICHQLEILELVQRLNEEQGCTIVMVLHDINQAIRFSDHLIAMKDGEIVANGTTKEVLTKQILEQVFNID
VVLSEDPRTGKPLLVTYDLFSKTYS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-64 51
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-56 49
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 3e-56 49
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 3e-56 49
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-56 49
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-58 48
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-58 47
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-58 47
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-58 47
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-58 47
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 6e-56 45
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 6e-56 45
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-51 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SLGD_02175 YP_003472390.1 ferrichrome ABC transporter ATP-binding protein BAC0164 Protein 1e-51 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SLGD_02175 YP_003472390.1 ferrichrome ABC transporter ATP-binding protein VFG0925 Protein 7e-63 50
SLGD_02175 YP_003472390.1 ferrichrome ABC transporter ATP-binding protein VFG1042 Protein 1e-51 44