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Name : SLGD_02010 (SLGD_02010) Accession : YP_003472225.1 Strain : Staphylococcus lugdunensis HKU09-01 Genome accession: NC_013893 Putative virulence/resistance : Unknown Product : pathogenicity island protein, integrase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4974 EC number : - Position : 2085570 - 2086790 bp Length : 1221 bp Strand : + Note : - DNA sequence : TTGTGGCATGAGAAATTCACCAATAAACATGGCAACATACAATATAGGTTCTACGAGAAGTACAAAGACCCACTCACAAA CAAATGGCGACGTGTTAGTGTGGTACTTAATAAGAATGGTAAGCAATCACAAAAAGAAGCTCAAAGACTCTTAAATGAGC GTATAGAGGCAAAACTGAATGATAAGACACCTACTACACTTAAGTCACTAACTTTTCATGCTGCAAGTGATGAGTGGTTT CAGAATTATATCAAAACGTCTGGGTCAAAAAGAACAACTATTAAAACTAAATTGAGTAAGCTAAACACTTTGAAGAAATT TGTAGATGAAGATATTTTAATCAATAAAATAACACTTTCATATGCACAACAAGTTTTCGATGAAATGGATAGTAAAGGTT ATGTATATCAAGTTAACAAAGATGCGTTAAGCATATTCAAAAATGTATTTGAATACACTAGACGCATCTATAAACTGCAA GATTTAGAATTTTTAAAAGATATAACGTTAAATAAAAGAATTAAGTCTTATGATGAAGTTAAAGCTAAACGTAATAAATA CCTCGAATTAAATGAAATACAATCTATCATCAAAGATATTAATATGAAGGCTCAGAAGATGCACTCATGTATCCATAAGC GGTTTTATTTATTCGTTGCACTCATGACCGAATTTCAAGCCTTAAATGGTATGCGTATTGGTGAAATGTTAGCCATTCAA AATGAAGATATAGACTTTGATAATAAGAGTTTAAATATTAACGGAACAATCCATTGGTTTCACGATGAATCTGGTGGATT CGGTGTAAAAGATACCACTAAAACAGAGTCTAGTTATAGAACAATTGGATTGAGTAGCAGAAGTTGCGAGATATTAAAGA AAGCAATACTGGAGAACAAAAAGGATTCAAAATGGAATGATGGATATCTAAATAGAAATTTTATATTTACTAATCATAAA GGCAACCCAATGCAGACTGAAAGATTCAATAAAATCCTTAGGGAAGCAGCTAAAGATGTTGGTATTGATAAAGAAGTTTC TTCACATATATTAAGACATAGCCACATATCATTACTCTCTCAACAAGGCGTGTCACTTAAAGCTATTATGGATCGTGTAG GCCATTCCGACCACCGTACAACACTTTCCATTTATTCTCACGTTACTGAACAGATGGATAAAGATATGATGAACAAACTT GAACAGGTAAAACTTGGATAA Protein sequence : MWHEKFTNKHGNIQYRFYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHAASDEWF QNYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQ DLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINMKAQKMHSCIHKRFYLFVALMTEFQALNGMRIGEMLAIQ NEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFIFTNHK GNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKL EQVKLG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| int | AAC28969.1 | integrase | Not tested | SaPI1 | Protein | 3e-167 | 98 |
| SACOL0885 | YP_185756.1 | pathogenicity island protein, integrase | Not tested | vSa1 | Protein | 1e-165 | 97 |
| int | AAL04148.1 | integrase-like protein | Not tested | SaPI3 | Protein | 1e-165 | 97 |
| int | YP_493499.1 | integrase | Not tested | SaPI5 | Protein | 1e-164 | 96 |
| SAAV_0787 | YP_003281710.1 | pathogenicity island protein, integrase | Virulence | SaPIAv | Protein | 6e-166 | 96 |
| SAUSA300_1438 | YP_494135.1 | phiSLT ORF401-like protein, integrase | Not tested | ¥ÕSa2 | Protein | 3e-71 | 47 |
| int | NP_646259.1 | integrase | Not tested | ¥ÕSa2 | Protein | 4e-71 | 47 |
| SAR0366 | YP_039823.1 | integrase | Not tested | SaPI4 | Protein | 9e-73 | 47 |
| SAOV_0274 | YP_005735791.1 | putative prophage integrase | Not tested | ¥ÕSa1 | Protein | 7e-72 | 46 |
