Gene Information

Name : SLGD_00001 (SLGD_00001)
Accession : YP_003470276.1
Strain : Staphylococcus lugdunensis HKU09-01
Genome accession: NC_013893
Putative virulence/resistance : Unknown
Product : LSU methyltransferase RlmH/ybeA
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 405 - 884 bp
Length : 480 bp
Strand : +
Note : -

DNA sequence :
ATGAAAATCACAATACTTGCAGTAGGAAAATTAAAAGAAAAATACTGGAAACAGGCTATTGCAGAATATGAAAAACGCCT
GAGTGCCTATAGTAAAATAGAACTGATAGAAGTACCAGACGAAAAAGCACCAGAAAATATGAGCGACAAAGAAATAGAAC
AAGTAAAAGCCAAAGAAGGCCAACGTCTCCTAGCTAAAATTAAGCCTCAAGCAACAGTCATTACATTAGAAATTGCAGGG
AAAATGCTGTCATCAGAAGGCTTAGCACAAGAATTACAACAACGTATGACCCAAGGCCAAAGCGACTTCACCTTTGTTAT
TGGCGGATCAAACGGATTACATAAAGACGTCTTAACACGTAGCAACTACGCACTCTCATTCAGCAAAATGACCTTCCCAC
ACCAAATGATGCGCGTGATTTTAATCGAGCAAGTCTACCGCACATTTAAAATTATGCGAGGCGAAGCGTATCATAAGTGA

Protein sequence :
MKITILAVGKLKEKYWKQAIAEYEKRLSAYSKIELIEVPDEKAPENMSDKEIEQVKAKEGQRLLAKIKPQATVITLEIAG
KMLSSEGLAQELQQRMTQGQSDFTFVIGGSNGLHKDVLTRSNYALSFSKMTFPHQMMRVILIEQVYRTFKIMRGEAYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 8e-69 92
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 8e-69 92
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 8e-69 92
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 8e-69 92
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 8e-69 92
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 3e-68 92
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 8e-69 92
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-68 92
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 8e-69 92
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-68 92
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 8e-69 92
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 8e-69 92
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 2e-63 92
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 8e-69 92
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 6e-68 91
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 6e-68 91
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 1e-67 91
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 8e-67 89
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 8e-45 85