Gene Information

Name : intB (XBJ1_3367)
Accession : YP_003469249.1
Strain : Xenorhabdus bovienii SS-2004
Genome accession: NC_013892
Putative virulence/resistance : Unknown
Product : KpLE2 phage-like element; P4-like integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 3282924 - 3284195 bp
Length : 1272 bp
Strand : -
Note : -

DNA sequence :
ATGAAACTTAATGCACGACAAATCGAAACTGCAAAACCCAAAGAAAAAACCTACAAACTCGCCGATGGCGGCGGTCTCTA
TTTAGAAGTCTCGTCACGCGGCTCGAAATACTGGCGCATGAAGTATTACCGCCCGACCGATAAAAAAGAAGACCGTCTGG
CGTTCGGTGTTTATCCGACTGTATCCTTAGCCGATGCCCGCGCTAAACGCGATGAAGCCAAAAAACTGATGGCACAGGGC
ATCGATCCCAAAGCCGAAAAGAAAGGCACACCAACGCCTGCCAAAGTCAACTCGTTTGAACAAGTCGCCCGTGCATGGCA
CGCCAGTAACAAACGCTGGAGCGACAGCCACCGTCAAAAAATCCTGCGCAGCCTTGAGCAATATATTTTCCCCCATATCG
GCGCCAGAGATATTACCACATTACGCACCAGCCAGCTTTTAGCGCCCGTCAAGGCCATTGATGAGCAGGACAAACACGAT
ATCGCCCAGCGGCTGCGCCAGCGTATCACCGCCATCATGCGCTACGCCGTCCAGAATGATATTCTGGAGTCCAACCCGGC
TAACGATATGACCGGCGCACTCACCACCGCAAAATCCCGTCATCACCCCGCCTTGCCCCATGAATGTTTACCTGATTTCC
TGAACCGATTGTCTGCTTACCGAGGACGCTTACTGACCAAAATCGCGGTAGAACTGGCGCTGCTGACGTTTGTCCGCTCC
AGTGAGCTGAGATTTGCCCGCTGGCAGGAAATCGACCTTGAAAATTCAGTATGGAAAATCCCTGCCACAAGGCAACCGAT
TAAAGGCGTTCGCTTTTCTGAGCGCGGCATGAAAATGAAAACGGATCACATTGTACCGTTGAGCCGTCAGGCGGTTGGTC
TTATCAACGCGTTACACGAACTGAGCGGCAACTGCGACGTGATGTTCCCCAGCGATCATAATTCCGCGAAAGTCATGAGT
GAAAACACGGTTAACAAGGCATTACGCGCGATGGGGTACGATACTCAAACCGAAGTCTGCGGGCATGGTTTCCGCACAAT
GGCACGTGGTGCAATGGGGGAATCCGGCCTGTGGAGCGATGACGCTATCGAGCGCCAGTTAAGCCATATCGAACGAAACA
ACGTCCGGGCGGCCTATATTCACACCTCCAAGCATCTGGACGAACGGCGGCTGATGGTGCAGTGGTGGGCGGATTATCTG
GATGCCAACCGGGAAAAACCAATCACACCCTATGACTTCGCCAAACCGCTGCGCGACAGAGCAAACCGATAG

Protein sequence :
MKLNARQIETAKPKEKTYKLADGGGLYLEVSSRGSKYWRMKYYRPTDKKEDRLAFGVYPTVSLADARAKRDEAKKLMAQG
IDPKAEKKGTPTPAKVNSFEQVARAWHASNKRWSDSHRQKILRSLEQYIFPHIGARDITTLRTSQLLAPVKAIDEQDKHD
IAQRLRQRITAIMRYAVQNDILESNPANDMTGALTTAKSRHHPALPHECLPDFLNRLSAYRGRLLTKIAVELALLTFVRS
SELRFARWQEIDLENSVWKIPATRQPIKGVRFSERGMKMKTDHIVPLSRQAVGLINALHELSGNCDVMFPSDHNSAKVMS
ENTVNKALRAMGYDTQTEVCGHGFRTMARGAMGESGLWSDDAIERQLSHIERNNVRAAYIHTSKHLDERRLMVQWWADYL
DANREKPITPYDFAKPLRDRANR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 8e-149 73
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-118 58
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-118 58
int AAK00456.1 Int Not tested SHI-1 Protein 1e-110 58
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 3e-117 57
int AAL51003.1 CP4-like integrase Not tested LEE Protein 3e-117 57
int AAK16198.1 Int Not tested PAI-I AL862 Protein 8e-118 57
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 8e-118 57
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 3e-118 57
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 3e-118 57
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 1e-118 57
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 3e-117 57
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 1e-117 57
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 1e-115 57
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 5e-117 56
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-117 56
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-117 56
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 1e-117 56
int AAL51028.1 CP4-like integrase Not tested LEE Protein 1e-117 56
int-phe AAL60261.1 Int-phe Not tested LEE Protein 1e-117 56
int CAC81896.1 integrase Not tested LEE II Protein 7e-110 56
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 6e-117 56
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 6e-107 55
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-109 55
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-109 55
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 4e-104 52
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 4e-104 52
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 1e-94 50
int CAA08754.1 integrase Not tested HPI Protein 3e-95 50
int2 NP_993013.1 integrase Not tested HPI Protein 1e-94 50
int CAB59974.1 integrase Not tested HPI Protein 3e-95 50
int CAA21384.1 - Not tested HPI Protein 1e-94 50
int YP_002346908.1 integrase Not tested HPI Protein 1e-94 50
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 5e-73 50
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 6e-86 50
unnamed AAD17660.1 unknown Not tested HPI Protein 1e-91 48
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 1e-92 48
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 2e-72 42
int AAD44730.1 Int Not tested SHI-2 Protein 3e-70 42
int CAC39282.1 integrase Not tested LPA Protein 1e-70 42
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-70 42
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-69 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 3e-69 42
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 3e-69 42
int AAC31482.1 CP4-like integrase Not tested LEE Protein 3e-69 41
int ACU09430.1 integrase Not tested LEE Protein 3e-69 41
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 4e-69 41
ECs4534 NP_312561.1 integrase Not tested LEE Protein 4e-69 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
intB YP_003469249.1 KpLE2 phage-like element; P4-like integrase VFG0626 Protein 1e-118 57
intB YP_003469249.1 KpLE2 phage-like element; P4-like integrase VFG1693 Protein 1e-117 57
intB YP_003469249.1 KpLE2 phage-like element; P4-like integrase VFG1536 Protein 3e-107 55
intB YP_003469249.1 KpLE2 phage-like element; P4-like integrase VFG0598 Protein 1e-69 42
intB YP_003469249.1 KpLE2 phage-like element; P4-like integrase VFG0783 Protein 2e-69 41