Gene Information

Name : yfhA (XBJ1_3037)
Accession : YP_003468925.1
Strain : Xenorhabdus bovienii SS-2004
Genome accession: NC_013892
Putative virulence/resistance : Virulence
Product : response regulator in two-component regulatory system (EBP family)
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2999306 - 3000643 bp
Length : 1338 bp
Strand : -
Note : -

DNA sequence : 
ATGACTGTGCGCAATCCCGCCCGTCTTCTTTTAGTTGACGATGATCCAGGCTTACTAAAACTATTGGGAATGCGTCTGAC
CAGCGAAGGGTTTCGTGTCACGACGGCAGAGAGTGGTCATGAAGCGTTGCGTCTATTGGCGAAAGAAAAAGTGGATTTAG
TCATCAGTGACTTACGCATGGATGAGATGGATGGCATGGCATTGTTTGCGGAAATCCAGAAGCAGCATCCCGGTATGCCA
GTGATTATTCTGACGGCTCACGGTTCTATTCCCGATGCTGTTGCGGCGACACAGCAAGGTGTATTTAGTTTCTTGACTAA
ACCCGTTGATCGTGACGCTCTTTATAAAGCCATTGATGCTGCGTTGGAACTGTCAAAACCGGCCATAGATGGGCAGTGGT
GCGAACAGATTGTAACGCGAAGCCCCTTGATGCTGCGTTTGCTGGAACAGGCAAAAATGGTCGCTCAATCAGATGTCAGC
GTCCTGATTAATGGACAAAGCGGAACGGGTAAAGAAGTGTTGGCTCAAGCTATCCATCGGGTAAGCCCCAGAGTGAAGAA
ACCTTTTATTGCGATCAACTGTGGCGCTTTGCCTGAACAATTGCTGGAGTCTGAATTATTCGGCCACGCCAAAGGCGCAT
TTACTGGTGCGGTCAGCAGTCGGGAAGGGCTGTTTCTGGCGGCGCAGGGAGGAACATTATTCCTTGATGAAATCGGTGAT
ATGCCTTTGGCACTGCAAGTCAAACTATTGAGAGTTTTACAGGAACGCAAAGTTCGCCCATTGGGGAGTAACCGTGATAT
AGACATCGATGTCAGAATTATTTCCGCCACTCACCGTGACTTACCCAAGGCGATGCAGCGTAATGAATTCCGCGAAGATC
TCTACTATCGACTGAACGTCGTCAACATGAAAATTCCTGCCCTGAACGAACGGGCTGAAGATATTCCTTTATTGGCTAAT
CACCTGTTACGTGCATCTGCCAAACGCCATAAACCTTTTGTCCGCAGTTTTTCGACTAATGCGATGAAATGTCTGATGGC
AGCGAGCTGGCCGGGCAATGTACGTCAGTTGGTCAACGTTATCGAGCAGTGTGTCGCACTGACGACTGCACCGGTGATTA
GTGATGCACTGGTCATGCAGGCGCTGGAAGGGGAAAACACGGCATTGCCGACATTTGTGGAGGCTCGTGGGCAATTTGAG
TTGCACTACCTGCGTAAATTGCTGCAAATGACCAAAGGCAACGTCACCCATGCTGCCCGTATGGCAGGACGTAACCGGAC
GGAGTTTTATAAATTGCTGGCTCGTCACGAATTGGATGCCAACGATTTTAAGGAATAA

Protein sequence : 
MTVRNPARLLLVDDDPGLLKLLGMRLTSEGFRVTTAESGHEALRLLAKEKVDLVISDLRMDEMDGMALFAEIQKQHPGMP
VIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDAALELSKPAIDGQWCEQIVTRSPLMLRLLEQAKMVAQSDVS
VLINGQSGTGKEVLAQAIHRVSPRVKKPFIAINCGALPEQLLESELFGHAKGAFTGAVSSREGLFLAAQGGTLFLDEIGD
MPLALQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMQRNEFREDLYYRLNVVNMKIPALNERAEDIPLLAN
HLLRASAKRHKPFVRSFSTNAMKCLMAASWPGNVRQLVNVIEQCVALTTAPVISDALVMQALEGENTALPTFVEARGQFE
LHYLRKLLQMTKGNVTHAARMAGRNRTEFYKLLARHELDANDFKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 3e-65 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 3e-65 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfhA YP_003468925.1 response regulator in two-component regulatory system (EBP family) BAC0467 Protein 3e-77 45
yfhA YP_003468925.1 response regulator in two-component regulatory system (EBP family) BAC0089 Protein 2e-83 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfhA YP_003468925.1 response regulator in two-component regulatory system (EBP family) VFG1249 Protein 2e-69 45
yfhA YP_003468925.1 response regulator in two-component regulatory system (EBP family) VFG0116 Protein 2e-61 44
yfhA YP_003468925.1 response regulator in two-component regulatory system (EBP family) VFG1214 Protein 4e-71 44