Gene Information

Name : XBJ1_2521 (XBJ1_2521)
Accession : YP_003468411.1
Strain : Xenorhabdus bovienii SS-2004
Genome accession: NC_013892
Putative virulence/resistance : Resistance
Product : regulatory protein pqrA
Function : -
COG functional category : K : Transcription
COG ID : COG2207
EC number : -
Position : 2497402 - 2497764 bp
Length : 363 bp
Strand : +
Note : -

DNA sequence : 
ATGTTAGAAAGTGTCATCAACGATATTGTCAGATGGCTAGAAAGCCAGCTTCAACGTACTGAAGGTATCAAAATAGATGC
CATTGCACATAAAAGTGGCTATTCAAAATGGCATTTACAGCGAATTTTTAAGGAACTGAAAGGCTGTACACTGGGTCAAT
ATGTGCGTAGACGTCGTCTCCATGAAGCAGCAAAGTCTTTGCATGAAGATAGCTTGCCGATTCTTGATATTGCTTTGCAA
TATGGTTTTAGTTCTCAGGCTACATTTACCCGAATATTTAAGAAGCATTTTAATACAACACCCGCTAAATTCAGGGCAAG
TGGGCAGTTACCCGAGTTTAAGACTTTCTTACATTGCGAATAA

Protein sequence : 
MLESVINDIVRWLESQLQRTEGIKIDAIAHKSGYSKWHLQRIFKELKGCTLGQYVRRRRLHEAAKSLHEDSLPILDIALQ
YGFSSQATFTRIFKKHFNTTPAKFRASGQLPEFKTFLHCE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 4e-19 46
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 4e-19 46
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 3e-20 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XBJ1_2521 YP_003468411.1 regulatory protein pqrA CP001138.1.gene612.p Protein 2e-22 50
XBJ1_2521 YP_003468411.1 regulatory protein pqrA NC_010558.1.6276025. Protein 2e-19 46
XBJ1_2521 YP_003468411.1 regulatory protein pqrA CP001138.1.gene1637. Protein 3e-21 45
XBJ1_2521 YP_003468411.1 regulatory protein pqrA BAC0560 Protein 1e-21 44
XBJ1_2521 YP_003468411.1 regulatory protein pqrA NC_002695.1.917339.p Protein 1e-21 44
XBJ1_2521 YP_003468411.1 regulatory protein pqrA CP000034.1.gene1596. Protein 9e-22 44
XBJ1_2521 YP_003468411.1 regulatory protein pqrA CP000034.1.gene4505. Protein 4e-21 43
XBJ1_2521 YP_003468411.1 regulatory protein pqrA BAC0371 Protein 2e-21 43
XBJ1_2521 YP_003468411.1 regulatory protein pqrA NC_002695.1.914293.p Protein 2e-21 43
XBJ1_2521 YP_003468411.1 regulatory protein pqrA CP001918.1.gene2033. Protein 3e-21 43
XBJ1_2521 YP_003468411.1 regulatory protein pqrA CP000647.1.gene1624. Protein 7e-22 43
XBJ1_2521 YP_003468411.1 regulatory protein pqrA CP001138.1.gene4488. Protein 8e-21 42
XBJ1_2521 YP_003468411.1 regulatory protein pqrA CP001918.1.gene327.p Protein 2e-21 42
XBJ1_2521 YP_003468411.1 regulatory protein pqrA CP000647.1.gene4499. Protein 2e-21 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XBJ1_2521 YP_003468411.1 regulatory protein pqrA VFG1038 Protein 2e-19 46
XBJ1_2521 YP_003468411.1 regulatory protein pqrA VFG0585 Protein 7e-21 42