Gene Information

Name : XBJ1_2405 (XBJ1_2405)
Accession : YP_003468299.1
Strain : Xenorhabdus bovienii SS-2004
Genome accession: NC_013892
Putative virulence/resistance : Virulence
Product : chelated iron transport system membrane protein yfeD
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2377103 - 2377978 bp
Length : 876 bp
Strand : +
Note : -

DNA sequence : 
ATGAGTACATTGATTGAATTCATTACTGAACCCTTCATGCATGATTTTATGCAGAGAGCTATTTTCGCTTCTGTCATTGT
GGGGGCAGTCTGCGCGGTACTTTCCTGCTATTTAGTATTAAAGGGCTGGTCACTGATGGGAGATGCCATTTCCCATGCGG
TCTTACCTGGTATCGTATTAGCATTTGTCGCTGGAATACCACTCGCAATAGGTGCTTTTCTTTCAGGGATATTTTGCGCA
TTCGCTACCGGATATCTGAAAGAACACAGTCGAATCAAAGAGGATACAGTCATGGGTATTGTATTCTCCGGCATGTTTGC
ACTGGGTTTAGTCCTGTTTACTCGCATAGATACCGATCAGCATCTGACGCATATTCTATTTGGTAGCATACTTGGCATTA
CCCAGCATGAATTGATTCAGACACTATGTATTGCTGGCGTAACACTGGCAATTGTGTTGCTGAAACGTAAAGATTTTATG
CTCTACTGTTTCGATCCCAATCAGGCACGCGTTGTCGGTCTGCCCGTGAAACTTATCCATTATGGCTTATTGTCCCTGCT
GGCCTTAACTATTGTCGCATCGCTGCAAGCCGTTGGCATTATTTTGGTTATTGCCATGCTGATATCTCCCGGTATTATTG
CATTTATGCTCTGCCGGAGTTTTGATCGCATGCTTATTGTTGCAATGATTGCTTCTGTGTCATCCAGTGTGCTCGGTACA
ATAATCAGCTTTCACATTGATGGTGAAACAGGGCCTTGTATCGTCATTATTCAAGCTATCTTCTTCATAACAGCACTTAT
TTATGACCAAATAAAATTAGCTAGAAAGAAAATGAGCAAGAAGCGTACCAGAGATATCCCATCCCCATTATCATAA

Protein sequence : 
MSTLIEFITEPFMHDFMQRAIFASVIVGAVCAVLSCYLVLKGWSLMGDAISHAVLPGIVLAFVAGIPLAIGAFLSGIFCA
FATGYLKEHSRIKEDTVMGIVFSGMFALGLVLFTRIDTDQHLTHILFGSILGITQHELIQTLCIAGVTLAIVLLKRKDFM
LYCFDPNQARVVGLPVKLIHYGLLSLLALTIVASLQAVGIILVIAMLISPGIIAFMLCRSFDRMLIVAMIASVSSSVLGT
IISFHIDGETGPCIVIIQAIFFITALIYDQIKLARKKMSKKRTRDIPSPLS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-66 56
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-66 56
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-66 56
sitD NP_461785.1 permease Virulence SPI-1 Protein 4e-67 56
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 3e-67 56

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XBJ1_2405 YP_003468299.1 chelated iron transport system membrane protein yfeD BAC0442 Protein 7e-101 75
XBJ1_2405 YP_003468299.1 chelated iron transport system membrane protein yfeD BAC0352 Protein 2e-67 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XBJ1_2405 YP_003468299.1 chelated iron transport system membrane protein yfeD VFG0528 Protein 2e-67 56