Gene Information

Name : XBJ1_2404 (XBJ1_2404)
Accession : YP_003468298.1
Strain : Xenorhabdus bovienii SS-2004
Genome accession: NC_013892
Putative virulence/resistance : Virulence
Product : chelated iron transport system membrane protein yfeC
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2376231 - 2377106 bp
Length : 876 bp
Strand : +
Note : -

DNA sequence : 
ATGATGGAGTTGCTGCTACAACCATTCAATTACAACTATATGGTGAAAGCCATGTGGGTAAGTGCCATCGTAGGTGCAGT
CTGTGCTTTTTTATCTGCCTATCTGATGCTGAAAGGTTGGTCGCTGATGGGAGACGCCCTTTCCCATTCTGTTGTACCGG
GCGTAGCAGGCGCATATGCTCTCGGTTTGCCTTATGCGGGTGGAGCCTTTTTTACTGGTATGCTCGCGGCATTATCAATG
ACTCTGGTTCGTCATATCACGCGGTTACGTGAAGATGCGGTGATCGGTTTTATATTCTCCACTTTTTTCGCTGTCGGGTT
ATTAATCGTTTCCTTAAACCCCACTTCCGTTAATGTACAAACCATTATTCTCGGCAATATTTTAGGCATTTCTGATGAAG
ATGTTTTGCAAGTCGAAATCATTATTGCTGTCTCCTTTATTATCTTGATGCTGCTCTGGAAAGATCTTTTAGTTGTTTTC
TTCGATGAAACCCATGCACGTTCTATCGGTTTATCACCTCTACGGTTAAAAATCATTTTCTTCACCTTACTTAGTGCCTG
TACTGTTGCCGCATTGCAAACAGTCGGCGCCATTCTGGTCATCGCAATGGTAGTTACTCCTGGTGCCACAGCCTATTTAT
TGACAGATCGGTTTAAGCACCTGCTTATCATTGCTGTCACCATCGGATCATTAACGAGTGCTATCGGTGCTTACTTGAGT
TACTTCCTCAATGGTGCAACAGGGGGAGTGATTGTCACGCTACAAACTGTGATTTTCCTACTGGCTTTCTTCTTTGCCCC
CAAACATGGCATGTTAGCGTCCCGCAGACGAGCGAAAAAAGAATCTTTAGAATTAACTCAAGGAGGACGCTCATGA

Protein sequence : 
MMELLLQPFNYNYMVKAMWVSAIVGAVCAFLSAYLMLKGWSLMGDALSHSVVPGVAGAYALGLPYAGGAFFTGMLAALSM
TLVRHITRLREDAVIGFIFSTFFAVGLLIVSLNPTSVNVQTIILGNILGISDEDVLQVEIIIAVSFIILMLLWKDLLVVF
FDETHARSIGLSPLRLKIIFFTLLSACTVAALQTVGAILVIAMVVTPGATAYLLTDRFKHLLIIAVTIGSLTSAIGAYLS
YFLNGATGGVIVTLQTVIFLLAFFFAPKHGMLASRRRAKKESLELTQGGRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-80 70
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-80 70
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-80 70
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-80 70
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 9e-81 70

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XBJ1_2404 YP_003468298.1 chelated iron transport system membrane protein yfeC BAC0441 Protein 2e-99 88
XBJ1_2404 YP_003468298.1 chelated iron transport system membrane protein yfeC BAC0351 Protein 5e-81 70

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XBJ1_2404 YP_003468298.1 chelated iron transport system membrane protein yfeC VFG0527 Protein 5e-81 70