Gene Information

Name : XBJ1_2403 (XBJ1_2403)
Accession : YP_003468297.1
Strain : Xenorhabdus bovienii SS-2004
Genome accession: NC_013892
Putative virulence/resistance : Virulence
Product : chelated iron transport system membrane protein yfeB
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : 3.6.3.28
Position : 2375323 - 2376234 bp
Length : 912 bp
Strand : +
Note : -

DNA sequence : 
ATGAGTCATTCATCGTTAAACCATCAATCACTATTTGAGCATCCTCATTTAATTGTTGATGATGCTACCGTCACTTACAA
CAATGGGCACACCGCCATATATGACGCCAGTTTCGATATTACCGGCGGCACAATTTGTGCGCTGGTAGGTATGAATGGCA
GCGGAAAATCCACATTATTCAAAACAATCATGGGATTAGTTACTCCCTCCCACGGAAAAGTCACCCTCAATGCACAAACC
ATCAAGACTGCCTTAAAACAAAATATCATTGCATATGTTCCACAGACTGAGGATGTAGACTGGAATTTTCCAGTTTTAGT
TTCCGATGTTGTGATGATGGGCCGCTATGGAAAAATGGGATTTTTGCGCAGACCCAGTAAACGTGACCATCAAATCGTGG
ATAAAGCGCTTGAACGCGTCGGGCTGAATGAACTACGAAATCGACAAATCGGTGAGCTTTCTGGTGGGCAGAAAAAACGG
ACATTTTTAGCACGAGCACTAGCACAGGAAGGGAAAGTGCTACTGTTAGATGAGCCTTTTACTGGTGTCGACGTTAAGAC
AGAAAATGCCATTGTCGATTTACTCCGTGACTTACGTGATGAAGGGCATCTAGTTTTGGTATCAACGCATAACCTCGGCA
GTGTGCCTGAATTTTGTGACCATGTTATCTTGATCAATCGCACTGTTTTGGCTAGTGGCCCAACTGAAACCACTTTCACC
CAAAAAAATCTGGAGACAACATTCGGGGGTGTTTTACGCCATATCAACCTTTCTGGCTCAGAGCTTCATGATGATGATGA
TCTGCGCTCACTGACTGTCATTACCGATGATGAACGGGCTGCTGTCTTCTATGGCTATGACCGTCATGTCCCACCACGTC
AAAGCCAAAAGCAGAAGGAAAATCAGCCATGA

Protein sequence : 
MSHSSLNHQSLFEHPHLIVDDATVTYNNGHTAIYDASFDITGGTICALVGMNGSGKSTLFKTIMGLVTPSHGKVTLNAQT
IKTALKQNIIAYVPQTEDVDWNFPVLVSDVVMMGRYGKMGFLRRPSKRDHQIVDKALERVGLNELRNRQIGELSGGQKKR
TFLARALAQEGKVLLLDEPFTGVDVKTENAIVDLLRDLRDEGHLVLVSTHNLGSVPEFCDHVILINRTVLASGPTETTFT
QKNLETTFGGVLRHINLSGSELHDDDDLRSLTVITDDERAAVFYGYDRHVPPRQSQKQKENQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 9e-85 66
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 5e-84 66
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 5e-84 66
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-84 66
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 1e-84 66
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 7e-39 41
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 5e-39 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XBJ1_2403 YP_003468297.1 chelated iron transport system membrane protein yfeB BAC0440 Protein 6e-114 78
XBJ1_2403 YP_003468297.1 chelated iron transport system membrane protein yfeB BAC0350 Protein 5e-85 66
XBJ1_2403 YP_003468297.1 chelated iron transport system membrane protein yfeB BAC0400 Protein 9e-46 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XBJ1_2403 YP_003468297.1 chelated iron transport system membrane protein yfeB VFG0526 Protein 5e-85 66