Gene Information

Name : yfjY (XBJ1_1840)
Accession : YP_003467746.1
Strain : Xenorhabdus bovienii SS-2004
Genome accession: NC_013892
Putative virulence/resistance : Virulence
Product : CP4-57 prophage; DNA repair protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 1797576 - 1798046 bp
Length : 471 bp
Strand : -
Note : -

DNA sequence : 
ATGTCCGAAATCGCATTATCTCCCGTTTTTCCGGTTAACGAACAACGCATTATCCGTCGAGCCCTGCGTCTGCTGGAGAA
ATATCAGCGCCAGCCGGGAGAGTCGTTTACCTCAACCAGCGTCACTAAAACCTGGCTGCAGCTGCAAATGGCGGGCCTTG
AGCGGGAAATCTTTATCGTCCTGTACCTCGATAACCAGCATCGTTTGCTGGAGCGTGAAACGCTGTTTACCGGCACGCTC
AGCCATACGGAGGTACATCCTCGCGAAGTGGTCAAAGCGGCTCTACGCCATAACGCCGCTGCGGTCATTCTGGCCCACAA
CCATCCATCCGGCGAAATGGAGCCCAGCCAGGCAGATCGGCACATCACAAAGCGGGTAGTGAGTGCACTGGCCTTGGTCG
AAGTGCGTGTGCTGGATCACCTCGTGGTAGGGGATGACGTGATGTCATTTGCAGAGCGCGGTTGGCTGTAG

Protein sequence : 
MSEIALSPVFPVNEQRIIRRALRLLEKYQRQPGESFTSTSVTKTWLQLQMAGLEREIFIVLYLDNQHRLLERETLFTGTL
SHTEVHPREVVKAALRHNAAAVILAHNHPSGEMEPSQADRHITKRVVSALALVEVRVLDHLVVGDDVMSFAERGWL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 2e-37 64
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 2e-38 63
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 2e-38 63
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 2e-38 63
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 1e-37 63
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 2e-37 63
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 1e-37 63
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 1e-37 63
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 8e-37 62
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 2e-37 61
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 2e-37 61
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 3e-38 60
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 8e-38 60
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 8e-38 60
unnamed AAL08475.1 unknown Not tested SRL Protein 1e-37 60
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 1e-37 60
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 9e-38 60
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 3e-37 59
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 2e-38 59
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 5e-33 59
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 5e-33 59
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-33 59
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 2e-30 57
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 7e-24 44
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 1e-21 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfjY YP_003467746.1 CP4-57 prophage; DNA repair protein VFG1528 Protein 4e-38 63
yfjY YP_003467746.1 CP4-57 prophage; DNA repair protein VFG0660 Protein 4e-38 61
yfjY YP_003467746.1 CP4-57 prophage; DNA repair protein VFG1066 Protein 5e-38 60
yfjY YP_003467746.1 CP4-57 prophage; DNA repair protein VFG1678 Protein 8e-39 59
yfjY YP_003467746.1 CP4-57 prophage; DNA repair protein VFG1617 Protein 1e-37 59
yfjY YP_003467746.1 CP4-57 prophage; DNA repair protein VFG1119 Protein 1e-33 59