Gene Information

Name : ybbA (XBJ1_1588)
Accession : YP_003467494.1
Strain : Xenorhabdus bovienii SS-2004
Genome accession: NC_013892
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 1549383 - 1550069 bp
Length : 687 bp
Strand : -
Note : -

DNA sequence : 
ATGGCTGTAGAAAGTATTCTTGAAGTTCATCATCTCACTAAACATGTTGGTCAGGGGGAACAGGTAATTAATATATTGCA
AGGTGTTGAGCTGGTTGTCGAGCCTGCGCAGACAATTGCCTTGATTGGAGAATCGGGATCAGGGAAATCAACCCTTCTGG
GTATTATTGCGGGGCTGGATGATGGCAGCGGCGGCGAAGTCCACTTATTGGGGCAAAACATCAGTCGTATGAACGAAGAA
CAAAGGGCGCAGCTACGGGCAAAAAATGTAGGTTTTGTTTTCCAGTCGTTTATGTTGATCCCAACTTTAAACGCGCTGGA
AAACGTCCAATTACCCGCGCTGCTTCGCGGTGAATCGGAAAATCAAAGTCGTCAGAATGCCATTGAATTACTTAAACAGT
TAGGATTAGGGCAACGCCTGAAACACATGCCAGCCCAACTTTCGGGGGGAGAGCAGCAGCGGGTTGCTCTGGCACGGGCA
TTCAGTACCCGCCCCAAAATCCTGTTTGCCGATGAGCCGACCGGTAATCTTGATCGTCAAACGGGTGATCGCATCGCGGA
TCTCTTATTTTCCCTTAATCACGATTACGCCACCACGTTGATTTTGGTAACCCATGACAGCCGGCTTGCAGCCCGTTGCC
AGCGTCGTTTACGTCTGGTGGATGGAACATTGCAGGAGGAAGTATGA

Protein sequence : 
MAVESILEVHHLTKHVGQGEQVINILQGVELVVEPAQTIALIGESGSGKSTLLGIIAGLDDGSGGEVHLLGQNISRMNEE
QRAQLRAKNVGFVFQSFMLIPTLNALENVQLPALLRGESENQSRQNAIELLKQLGLGQRLKHMPAQLSGGEQQRVALARA
FSTRPKILFADEPTGNLDRQTGDRIADLLFSLNHDYATTLILVTHDSRLAARCQRRLRLVDGTLQEEV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-29 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-29 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-29 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 6e-29 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ybbA YP_003467494.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 2e-33 45
ybbA YP_003467494.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 2e-28 44
ybbA YP_003467494.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 9e-32 43
ybbA YP_003467494.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 4e-33 41