Gene Information

Name : dnaB (XBJ1_1554)
Accession : YP_003467461.1
Strain : Xenorhabdus bovienii SS-2004
Genome accession: NC_013892
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : 3.6.1.-
Position : 1510175 - 1511554 bp
Length : 1380 bp
Strand : -
Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11162608, 11406602; Product type e : enzyme

DNA sequence :
ATGGACATGGCGCATGAACATTTACAGATCATCAGTGAAGAGGCGCCCAGCTATGCGTATGCCGAAGTGGGGGTGTTGGG
GGGGCTGGTACTGGAGAATGAGCGCTGGGATAGCGTTGTCCAGCTATTGGTTGCCGACGATTTTTATTTTCCGGCACACC
GGATAATATTTCAGGCCATCGCTGAACTGAGCGAAAAAAACTGTCCGTTCGACCTGATTACCCTGACCGATAGGCTGACC
CAGCGTGGGCAAATTGATCGGGCATGCGGTTTTGCTTATGTAGCGGAAGTGTGTAAAAACACGCCCAGTGCCGCCAATAT
TGAGGAGTATGCCCGTATTGTGGCGGAAAAAAGCCGGTTACGTCAGTTACTGGCACTGGGAAAATCCCTCAGCGCTGACG
TTTTTCAGCCGAATATTCAGTCAGATACCCTGATAGAGCAGGCAGAAAGTCAGTTGTTTAATCTGGCTGAAAAAGGTTCG
ACCCGCCAGCATCAGGAAATGACCCTGTTGCAGGGCGCAGACAGCCTGATTGCCCATCTGGAGCGAATACAAGGCTCACA
GGGAATAACCGGCACACCGACCGGATTTCAGGATCTTGATGAAAAAACCGGCGGCTTGCAGGCCGGTGATCTCATTTTGC
TGGCTGCCCGCCCTTCGATGGGGAAAACCGCGTTGGGACTGGCCTGTTGCTTGGGTGTCCTGCGGCACCGGGATGATGCC
GTGGTACAGATTTTCAGTCTGGAAATGCCGGCGGCACAACTGATGCTGCGCCTCACTGCCATGGAAGGCGGGGTTTCTCT
GAGCGCCCTGCGCAGCGGGATGCTGGATGATGAGCAGTGGGGACGCATCAGCCAGAGTCTGGATCAGTTTACCCGCTGGG
ATCAGCGTCTGGTGATCGATGATTGCAGTCATCAGACGCCCGCACTATTACGCGCCCGTGCCCGCCGCTATACCCGCAAA
TACGGTAAACCCGCCCTGATTATGGTTGACTACCTCCAGCTGATGTGTGCGCCCGGCCAGGAAAACCGGACACAGGAAAT
TGCCGATATCTCCCGTAACCTGAAAGCGTTGGGCAAAGAACTGGGCTGCCCGGTACTGGCGCTGTCCCAGCTTAACCGGC
AGGTCGAAAACCGTTCCGATAAACGTCCTAATAATGGTGACCTGCGTGATTCCGGCTCACTGGAGCAGGACGCCGACCTG
ATACTGCATCTCTATCGCGATGAAGTTTATCACCCGGACACACCCGATACGGGTATCGCTGAAATCATTATTGGTAAGCA
GCGTCAGGGTCCAACGGGCGTGGTTCGTGTGGGATTTGACGGCCAATATACGCGGTTTTTGGACTTATCCGCAGACAGTG
ATGGTTACGGGGGGAAATGA

Protein sequence :
MDMAHEHLQIISEEAPSYAYAEVGVLGGLVLENERWDSVVQLLVADDFYFPAHRIIFQAIAELSEKNCPFDLITLTDRLT
QRGQIDRACGFAYVAEVCKNTPSAANIEEYARIVAEKSRLRQLLALGKSLSADVFQPNIQSDTLIEQAESQLFNLAEKGS
TRQHQEMTLLQGADSLIAHLERIQGSQGITGTPTGFQDLDEKTGGLQAGDLILLAARPSMGKTALGLACCLGVLRHRDDA
VVQIFSLEMPAAQLMLRLTAMEGGVSLSALRSGMLDDEQWGRISQSLDQFTRWDQRLVIDDCSHQTPALLRARARRYTRK
YGKPALIMVDYLQLMCAPGQENRTQEIADISRNLKALGKELGCPVLALSQLNRQVENRSDKRPNNGDLRDSGSLEQDADL
ILHLYRDEVYHPDTPDTGIAEIIIGKQRQGPTGVVRVGFDGQYTRFLDLSADSDGYGGK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 3e-109 59
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 3e-108 57
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 1e-107 56
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 6e-109 55
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 4e-103 53
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 4e-103 53
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 4e-88 48
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 3e-94 48
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 2e-75 45