Gene Information

Name : XBJ1_1315 (XBJ1_1315)
Accession : YP_003467235.1
Strain : Xenorhabdus bovienii SS-2004
Genome accession: NC_013892
Putative virulence/resistance : Unknown
Product : CPS-53 (KpLE1) prophage; Sf6-like integrase (fragment)
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1297265 - 1298155 bp
Length : 891 bp
Strand : +
Note : -

DNA sequence :
ATGAAGTTAACAGCCCGGCAGGTGGACACTGCAAAGCCGAAAGAAAAACCCTATAAACTTGCAGATGGTGGCGGACTATA
CTTATTGGTTAACCCTAATGGCGCTCGCTATTGGCGGTTGAAGTACCGGATCGCAGGCAAAGAAAAATTACTCGCATTAG
GGGTATATCCTGATATCTCCCTCTCAGACGCAAGAACCAAGAGAAACGAAGCCCGGCGGACGCTATCGGATGGCAATGAT
CCGATAGAAGAAAAGAAAGCTGAAAAAGCAGCCAAAGCGTTTGCGGTCAGCAATAGTTTTGAATCCATCGCCATTGAGTG
GCACGAACATAAACGCCCCAACTGGTCAAAAGGGTATGCCGAAGACATTTTGGAATATCTGAAAAAAGATATCTTCCCGT
ATATTGGTAAACGTGCCGTTACCGAGATTAAACCCGCCGAAATGTTGGCTGTGCTCCGAAAAATGGAGCAACGCGGTGTT
TTGGATAAATTGAAAAAAACCAGACAGGCCTGTCGGCAAATTTTCACCTATGCCGTGATTACAGGGAGAGCTGAGTTCAA
TCCCGTTACTGATCTTGCCAGCGCACTTAAAGCACCGAAGCAAAAACACTTCTCACACCTTTTAGCTGATCAAATGAATG
CATTCCTCGTCGCCTTGGCGGGTTATAGCGGAAGCGAAGTGACCCAATCCGCGACACGTTTACTGATGCTTACTGGTGTG
CGTACCATCGAATTGAGAGAATCAGAATGGACTGAATTCGATTTCGATAAGGATATCTGGCAGATACCTGCTGAGCGAAT
GAAAATGCGCCGTCCTCACATCGTTCCGCTATCCAATCAGGTTAAAGCCATTCTTATCAAACTGCACTCTATTACAGGGC
GTGGGAAATAG

Protein sequence :
MKLTARQVDTAKPKEKPYKLADGGGLYLLVNPNGARYWRLKYRIAGKEKLLALGVYPDISLSDARTKRNEARRTLSDGND
PIEEKKAEKAAKAFAVSNSFESIAIEWHEHKRPNWSKGYAEDILEYLKKDIFPYIGKRAVTEIKPAEMLAVLRKMEQRGV
LDKLKKTRQACRQIFTYAVITGRAEFNPVTDLASALKAPKQKHFSHLLADQMNAFLVALAGYSGSEVTQSATRLLMLTGV
RTIELRESEWTEFDFDKDIWQIPAERMKMRRPHIVPLSNQVKAILIKLHSITGRGK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 2e-89 61
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 4e-86 58
int AAC31482.1 CP4-like integrase Not tested LEE Protein 3e-86 58
ECs4534 NP_312561.1 integrase Not tested LEE Protein 4e-86 58
int ACU09430.1 integrase Not tested LEE Protein 3e-86 58
int CAC39282.1 integrase Not tested LPA Protein 2e-86 58
aec33 AAW51716.1 Int Not tested AGI-3 Protein 2e-86 58
int AAD44730.1 Int Not tested SHI-2 Protein 9e-86 58
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 1e-84 58
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 1e-84 58
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 1e-84 58
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 2e-79 53
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 3e-54 43
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-56 43
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 1e-56 43
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 1e-56 43
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 8e-57 43
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 6e-57 43
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 8e-57 43
int AAL51028.1 CP4-like integrase Not tested LEE Protein 6e-57 43
int-phe AAL60261.1 Int-phe Not tested LEE Protein 6e-57 43
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 4e-56 43
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 1e-48 42
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 1e-48 42
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 3e-54 42
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 3e-56 42
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-56 42
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-56 42
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 5e-55 42
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-55 42
int AAL51003.1 CP4-like integrase Not tested LEE Protein 3e-56 42
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-56 42
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-56 42
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-56 42
int AAK00456.1 Int Not tested SHI-1 Protein 3e-49 42
int CAC81896.1 integrase Not tested LEE II Protein 3e-49 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XBJ1_1315 YP_003467235.1 CPS-53 (KpLE1) prophage; Sf6-like integrase (fragment) VFG0783 Protein 2e-86 58
XBJ1_1315 YP_003467235.1 CPS-53 (KpLE1) prophage; Sf6-like integrase (fragment) VFG0598 Protein 6e-85 58
XBJ1_1315 YP_003467235.1 CPS-53 (KpLE1) prophage; Sf6-like integrase (fragment) VFG0626 Protein 4e-57 43
XBJ1_1315 YP_003467235.1 CPS-53 (KpLE1) prophage; Sf6-like integrase (fragment) VFG1693 Protein 4e-56 42