Gene Information

Name : lse_0171 (lse_0171)
Accession : YP_003463414.1
Strain : Listeria seeligeri SLCC3954
Genome accession: NC_013891
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 172791 - 173483 bp
Length : 693 bp
Strand : +
Note : -

DNA sequence : 
ATGCCAAAACCGCTAATTGACATGAAAAATTTAACTAAAACGTATACGCTAGGCGGAGAAACCTTTAAAGCATTAGATGA
CGTTACTTTTACCGTTGACCAAGGCGAGTTTTTATCCATTGTTGGTCCATCCGGTTCTGGAAAGTCAACATTAATGAATA
TGATTGGTTGTTTAGATGTGCCAGATAAAGGAAGTTATCACCTTGACGATGTAGATGTGTTTCAATTAAGTGATAACAAA
TTATCCGAAATAAGAAATAAGAAAATCGGCTTTATTTTTCAACAGTTTAATTTACTTCCAAAACTATCTTCATTCGAAAA
TGTGGAGTTACCGCTAATTTACGCGGGATTGAGTGTTTCGGCACGTGAAAAAGCTGCTCTTGAATGTTTAGAAAAAGTCG
GGCTGCTTGAAAAACGCAAAAATTTACCTACTCAGCTTTCGGGGGGGCAACAACAACGGGTTGCAATTGCAAGAGCGCTC
GCTGGGAATCCACAAATTCTTTTAGCTGATGAACCAACTGGCGCGCTTGACTCCAAGACAGGTAAAGAAGTAATGGGTAT
TCTTCAAGAATTGAATCGCGCGGGAAATACTATTGTCATGATTACCCACGATCCAACTATTGCCTCTTATGGAACGAGAA
GCATTCGTATTCAAGATGGTAAATTATTCCACGAGGGGGGGACGAAAGCATGA

Protein sequence : 
MPKPLIDMKNLTKTYTLGGETFKALDDVTFTVDQGEFLSIVGPSGSGKSTLMNMIGCLDVPDKGSYHLDDVDVFQLSDNK
LSEIRNKKIGFIFQQFNLLPKLSSFENVELPLIYAGLSVSAREKAALECLEKVGLLEKRKNLPTQLSGGQQQRVAIARAL
AGNPQILLADEPTGALDSKTGKEVMGILQELNRAGNTIVMITHDPTIASYGTRSIRIQDGKLFHEGGTKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-30 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-31 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-31 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-31 42
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lse_0171 YP_003463414.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 1e-60 56
lse_0171 YP_003463414.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 9e-44 49
lse_0171 YP_003463414.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 3e-42 48
lse_0171 YP_003463414.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 1e-44 45
lse_0171 YP_003463414.1 ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 1e-36 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lse_0171 YP_003463414.1 ABC transporter ATP-binding protein VFG0869 Protein 2e-21 45