Gene Information

Name : lse_1105 (lse_1105)
Accession : YP_003464344.1
Strain : Listeria seeligeri SLCC3954
Genome accession: NC_013891
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1129714 - 1130415 bp
Length : 702 bp
Strand : +
Note : -

DNA sequence : 
ATGACCTATGTAGAATTGAAAGACGTATCGAAATACTATCAAATGGGTGAAAATGTTGTCACAGCTAACGATAAAATAAC
TTTCGGCATAAAAAAAGGTGAATTAGTTATTATTGTTGGTCCTTCTGGTGCAGGTAAATCTACTGTACTAAATATTTTAG
GAGGAATGGACAGCGCAAGTGAAGGTAAAATCATGGTTGATAACCAAGATATTGCTCAGTATAACGCAAAACAATTAACA
AAGTATCGCCGAACAGACGTTGGTTTTGTTTTCCAGTTTTATAATTTAGTACCTAATTTAACCGCAAAAGAAAACGTGGA
ATTAGCTGCTCAAATTGCGCCTAATGCATTAGATGCAGAAACTGTTTTAAAACAAGTTGGTCTGAGTCATCGGTTAGATA
ATTTCCCAGCACAACTTTCTGGGGGAGAGCAACAACGAGTCGCCATCGCGAGAGCACTCGCAAAAGCACCGAAATTATTG
CTTTGTGATGAACCTACAGGAGCACTTGATTATGATACCGGTAAATCGGTCTTAAAACTTTTGCAAGAAACCTGCAAAAA
TACGGGGACTACGGTTATTATCATCACACATAACACCGCAATTACACCAATTGCGGACCGAATTATCGAAATTAATAATG
CAAAAGTTCGTAGCAACAAAGAAAATCTGGACCCAATGTCAATTGACAACTTAGAATGGTAG

Protein sequence : 
MTYVELKDVSKYYQMGENVVTANDKITFGIKKGELVIIVGPSGAGKSTVLNILGGMDSASEGKIMVDNQDIAQYNAKQLT
KYRRTDVGFVFQFYNLVPNLTAKENVELAAQIAPNALDAETVLKQVGLSHRLDNFPAQLSGGEQQRVAIARALAKAPKLL
LCDEPTGALDYDTGKSVLKLLQETCKNTGTTVIIITHNTAITPIADRIIEINNAKVRSNKENLDPMSIDNLEW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-26 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-26 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-26 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lse_1105 YP_003464344.1 ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 5e-65 63
lse_1105 YP_003464344.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 6e-38 43
lse_1105 YP_003464344.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 8e-35 42
lse_1105 YP_003464344.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 2e-28 41