Gene Information

Name : TK90_0848 (TK90_0848)
Accession : YP_003460099.1
Strain : Thioalkalivibrio sp. K90mix
Genome accession: NC_013889
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 903968 - 905281 bp
Length : 1314 bp
Strand : -
Note : PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: aeh:Mlg_0674 two-component response regulator CbrB

DNA sequence : 
ATGACGCGCATCCTTCTGGTTGACGACGAAGCCCCGATCCGCCGTGCCGTGCGCCGGTTCCTGGAGCATCACGGTTTCCA
GGTACGTCTGGCCGAAGACCTCGCCAGCGCCCGTGCCGCCCTGCGGGAGGAATTGCCGGATCTGATGCTGGTGGATCTGC
GCCTGCCCGACGGCGAGGGCATCGAACTACTGGCCGAGGCCGGTCATACGCCCACCGTGATCATGACCAGTTACGCCTCG
GTCCCATCGGCCGTCACCGCGATGAAGGAAGGCGCGGCTGACTATATCGCCAAGCCATTCGATCACGATGCCCTGTTGCT
CACTCTTCGCGCCGCACTGCGGGCCGGGACCCCCGCCGCAACAACGGCGGGGAACGACCGCGATCCCGACGCTGATGGCC
TGGGCCTGATAGGCGACAGCGTGGCCATGCAGCGCCTGCGCGATCAGATCCACCGGGTCGCGACCACCCAGTCCACCGTA
CTGCTGCGTGGCGAGTCGGGCACCGGCAAGGAGCTGGCGGCACGGGCCCTGCATCGGCTCAGCTCGCGCGCAACCGGGCC
GTTTATTGCGGTCAACTGCGCAACCATCCCCGAAGGTCTGGTCGAGGCCGAGCTGTTCGGCCATGCCCAAGGCGCCTATA
CCGGCGCCGTCAAGGCGCGCACCGGCCTGATCCAGGCCGCTCACGGCGGCACGCTGTTCCTGGACGAGATCGGCGAACTG
GCCCCGGCCGCGCAGGCGCGGCTGCTGCGCGTGCTGCAGGACGGCGAGATCCGCCCGGTGGGCGCCAACGAAAACCTGAA
GGTCGATGTCCGCCTGCTGGCGGCCACGCATCGCGACCTGGAGGCGATGATCGGCGAGCAGGCCTTTCGTGCCGACCTGT
ACTACCGCTTGCGCGTACTGGAGCTGTCGATCCCGCCGCTGCGCGAGCGGCGCGAGGATATCCCGGCACTGGCCCGGCAT
TTCCTCGCCGATCTGGCAGGGAACGGCGGACCACCCGCCGAACTTACCCCAGCCGCGCAGAAATCCCTCGAGACCCACGA
CTGGCCAGGCAACGTGCGCGAACTGGCCAATGCCCTGGAGCGCGGCTGGGTGCTGAGCCCGGACGGCCGGATCGAACCGG
ACCACCTGGGGCTGGCCCCGGCTGCGGGCAATGGCGACACGCCCCCTGAAGGATCGAGCCTCAATGACTACTTCCGCCGC
TTCGTGCAGCAGAATCAGGATCAGATGACCGAGACCGAGCTCGCCCGTGCCCTGGGTATCAGCCGCAAGACCCTGTGGGA
ACGGCGCCAGCGCGAGAACCTGCCCCGCCCCTGA

Protein sequence : 
MTRILLVDDEAPIRRAVRRFLEHHGFQVRLAEDLASARAALREELPDLMLVDLRLPDGEGIELLAEAGHTPTVIMTSYAS
VPSAVTAMKEGAADYIAKPFDHDALLLTLRAALRAGTPAATTAGNDRDPDADGLGLIGDSVAMQRLRDQIHRVATTQSTV
LLRGESGTGKELAARALHRLSSRATGPFIAVNCATIPEGLVEAELFGHAQGAYTGAVKARTGLIQAAHGGTLFLDEIGEL
APAAQARLLRVLQDGEIRPVGANENLKVDVRLLAATHRDLEAMIGEQAFRADLYYRLRVLELSIPPLRERREDIPALARH
FLADLAGNGGPPAELTPAAQKSLETHDWPGNVRELANALERGWVLSPDGRIEPDHLGLAPAAGNGDTPPEGSSLNDYFRR
FVQQNQDQMTETELARALGISRKTLWERRQRENLPRP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-63 43
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-63 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TK90_0848 YP_003460099.1 Fis family transcriptional regulator BAC0467 Protein 7e-63 44
TK90_0848 YP_003460099.1 Fis family transcriptional regulator BAC0089 Protein 6e-65 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TK90_0848 YP_003460099.1 Fis family transcriptional regulator VFG1214 Protein 2e-67 44
TK90_0848 YP_003460099.1 Fis family transcriptional regulator VFG0116 Protein 8e-57 42
TK90_0848 YP_003460099.1 Fis family transcriptional regulator VFG1249 Protein 2e-54 41