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Name : TK90_0260 (TK90_0260) Accession : YP_003459511.1 Strain : Thioalkalivibrio sp. K90mix Genome accession: NC_013889 Putative virulence/resistance : Unknown Product : integrase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2801 EC number : - Position : 267353 - 268234 bp Length : 882 bp Strand : - Note : PFAM: integrase; KEGG: lch:Lcho_4143 integrase catalytic region DNA sequence : ATGGTTCGCTGCATCACGACGCTGGCGAAGAAGGCTCCGGTGAAGCGGGTGTGTGATCTGCTGGAGGTGAACCGGTCGGG CTACTACGCGGCGCAGACGCGCCGCCGGCGGCCGCGCCAGCCGTGTGCACTGGAGGCACGGGTCAAGGAGGCGTTCGAGC AGTCGGAATGGACCTACGGCAGCCGCCGTGTGCAGGCCGCCCTGCGTTCGGACGGTGTGACGGTGGGCCGCTACCGGGTC CGCCGTCTGATGCGGGAACAGGGCCTGCGCCCGGTCTGGAAGCGGGCGTTCGTCGTGACCACCCAGCGGGATGCGACCGC GCCGGTGGTGGAAAACCACCTGGACCGGCAGTTCCAGCCATCGCGCCCGAACGCGGCCTGGGTGACGGATATCACCTACA TCCGGACCCGCACCGGCTGGACGTATCTGGCGGCGGTGCTGGACCTGTTCAACCGCAAGGTGGTGGGCTGGTCCATGAGC CGAAGGCTGGATGCCGAGTTGGCCTGCAGTGCGCTACGCATGGCGCTGCAGAGCCGGCAACCCGAGCCGGGGCTGCTGGT GCACTCCGACCAGGGCTGTCAGTACACCAGCGACGCCTGGCGGCGTCTGCTGGTGCAGCACGGCGCCCGGGCCAGCATGA GCCGGCGGGGTAACTGCTGGGACAATGCGGTGGCCGAGCGCTTCTTCCTGAACCTGAAGACGGAGCGCGTCTGGCGACGG GACTATGCCAATCACGGCGAGGCCACCCGGGACATCACCGACTACATCGTCGGCTTCTACAACGAGCGCCGAAGGCACTC AACCCTGGGCTACCTGTCGCCCAACGCCTACGAGCGAAAATGGACAGCCGAACCTCCTATCGAGGTGTCCGAAATCGCTT GA Protein sequence : MVRCITTLAKKAPVKRVCDLLEVNRSGYYAAQTRRRRPRQPCALEARVKEAFEQSEWTYGSRRVQAALRSDGVTVGRYRV RRLMREQGLRPVWKRAFVVTTQRDATAPVVENHLDRQFQPSRPNAAWVTDITYIRTRTGWTYLAAVLDLFNRKVVGWSMS RRLDAELACSALRMALQSRQPEPGLLVHSDQGCQYTSDAWRRLLVQHGARASMSRRGNCWDNAVAERFFLNLKTERVWRR DYANHGEATRDITDYIVGFYNERRRHSTLGYLSPNAYERKWTAEPPIEVSEIA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tnpB | CAB61574.1 | transposase B | Not tested | HPI | Protein | 1e-43 | 46 |
| trp1329B | CAB46576.1 | IS1329 transposase B | Not tested | HPI | Protein | 3e-43 | 46 |
| tnpA1133 | ACK44540.1 | TnpA | Not tested | SGI1 | Protein | 2e-42 | 46 |
| orfB | AGK07032.1 | IS1133 transposase; OrfB | Not tested | SGI1 | Protein | 2e-42 | 46 |
| orfB | AGK07090.1 | IS1133 transposase; OrfB | Not tested | SGI1 | Protein | 2e-42 | 46 |
| l7094 | CAD33743.1 | ORF B protein | Not tested | PAI I 536 | Protein | 2e-35 | 45 |
| orfB | CAE85178.1 | OrfB protein, IS911 | Not tested | PAI V 536 | Protein | 2e-35 | 45 |
| tnpI | AAD44751.1 | TnpI | Not tested | SHI-2 | Protein | 2e-40 | 45 |
| unnamed | AAF09022.1 | unknown | Not tested | SHI-O | Protein | 2e-40 | 45 |
| Z1134 | NP_286669.1 | hypothetical protein | Not tested | TAI | Protein | 6e-40 | 45 |
| Z1573 | NP_287077.1 | hypothetical protein | Not tested | TAI | Protein | 6e-40 | 45 |
| c3575 | NP_755450.1 | transposase insF | Not tested | PAI I CFT073 | Protein | 4e-40 | 45 |
| hp1 | AAC61713.1 | Hp1 | Not tested | PAI I CFT073 | Protein | 3e-40 | 45 |
| unnamed | AAB86997.1 | hypothetical 31 KD protein | Not tested | SHI-1 | Protein | 2e-40 | 45 |
| unnamed | AAF09030.1 | unknown | Not tested | SHI-O | Protein | 2e-40 | 45 |
| unnamed | AAQ07468.1 | TnpI-like protein | Not tested | Not named | Protein | 2e-39 | 44 |
| unnamed | CAI43898.1 | putative transposase | Not tested | LEE | Protein | 2e-34 | 43 |
| aec65 | AAW51748.1 | Aec65 | Not tested | AGI-3 | Protein | 2e-34 | 43 |
| VPI2_0008c | ACA01825.1 | transposase OrfAB subunit B | Not tested | VPI-2 | Protein | 5e-40 | 42 |
| orfB | YP_001217329.1 | transposase OrfAB subunit B | Not tested | VPI-2 | Protein | 6e-40 | 42 |
| orfB | AGK06910.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 5e-40 | 42 |
| overlap with orfA characteristic of IS3 family members | AGK06947.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 5e-40 | 42 |
| orfB | AGK06993.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 5e-40 | 42 |
| orfB | AGK07051.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 5e-40 | 42 |
| orfB | ACX47958.1 | IS1359 transposase; OrfB | Not tested | SGI1 | Protein | 5e-40 | 42 |
| VC1789 | NP_231424.1 | transposase OrfAB subunit B | Not tested | VPI-2 | Protein | 6e-40 | 42 |
| ECs4537 | NP_312564.1 | hypothetical protein | Not tested | LEE | Protein | 6e-32 | 42 |
| unnamed | AAC31485.1 | L0006 | Not tested | LEE | Protein | 4e-32 | 42 |
| Z5089 | NP_290241.1 | transposase | Not tested | LEE | Protein | 1e-33 | 42 |
| unnamed | ACU09432.1 | IS911 transposase orfB | Not tested | LEE | Protein | 1e-33 | 42 |
| RS04 | AAP82949.1 | putative transposase | Not tested | PAPI-2 | Protein | 6e-34 | 42 |
| ECO111_3779 | YP_003236114.1 | putative IS602 transposase OrfB | Not tested | LEE | Protein | 2e-35 | 42 |
| unnamed | AAL57581.1 | transposase 1 | Not tested | LEE | Protein | 2e-34 | 42 |
| ECO111_3732 | YP_003236068.1 | putative IS3 transposase InsF | Not tested | LEE | Protein | 9e-34 | 42 |
| unnamed | AAL57519.1 | transposase 1 | Not tested | LEE | Protein | 6e-34 | 42 |
| insF | CAC43414.1 | transposase of insertion element IS3 | Not tested | PAI III 536 | Protein | 2e-34 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| TK90_0260 | YP_003459511.1 | integrase | VFG1484 | Protein | 1e-35 | 45 |
| TK90_0260 | YP_003459511.1 | integrase | VFG1706 | Protein | 2e-40 | 45 |
| TK90_0260 | YP_003459511.1 | integrase | VFG1122 | Protein | 3e-40 | 42 |
| TK90_0260 | YP_003459511.1 | integrase | VFG0785 | Protein | 6e-34 | 42 |
| TK90_0260 | YP_003459511.1 | integrase | VFG1631 | Protein | 1e-34 | 41 |
