Gene Information

Name : TK90_2124 (TK90_2124)
Accession : YP_003461350.1
Strain : Thioalkalivibrio sp. K90mix
Genome accession: NC_013889
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2244135 - 2245559 bp
Length : 1425 bp
Strand : +
Note : PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; KEGG: psa:PST_3646 two-component response regulator PilR

DNA sequence : 
ATGAGCATTCGCCACGTCCTGGTCGTGGACGACGAACCGGACATCTGCGAACTCCTCGAGATCACCCTCTCCCGCATGGG
GATCGAGGCCACCACGACGGAACACCTGAACGGGGCGCGCGAACTGCTCGCCGCGCGGGACTTTGACCTCTGTCTGACCG
ACATGCGCCTGCCCGATGGCGACGGGCTGGACCTCGTGCGCCACATCCAGGGTCAGCGCCCGGACCTTCCGGTGGCCGTG
ATCACGGCCCACGGGAGTGTGGACACCGCTGTCCAGGCCCTCAAGCTGGGCGCATTCGACTTTGTCAGCAAGCCGGTGGA
CCTGCAGCAGCTGCGCGAGCTGATTGACACCGCACTGCGAATGGAACCCGCCCCCGACCTGCCCGGCGCGCTGAATACCG
ACACGGTCCCGGACGCCGAAACCACCCGCATCGACAGCCCCCTGCTCGGTCAGGCCCCGCCGATGCAGACCCTGCGAGCG
ACGATCCAGAAGCTGGCGCGCAGCCAGGCACCGGTGTTCATCCGTGGCGAATCCGGCTCCGGCAAGGAGCTGGTGGCACG
CGAGATCCATCGCCTGGGGCCGCGCAGTGATCGCCCATTTGTGCCGGTCAATTGCGCGGCAATCCCCGGCGAGTTGATGG
AGAGCGAGTTCTTCGGCCACCGCAAGGGGGCCTTCACCGGGGCCACGCAGGATCACACCGGGCTGTTCCAGGCCGCCAGC
GGCGGCACGCTGTTTCTCGACGAGGTCGCCGACCTGCCGCTGCCCATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAACG
CGCGATCAAGCCGGTCGGGGGCACGCGCGAGATCCCGGTGGACGTGCGCCTTTTGTCGGCCACCCACCACGACCTGGAGC
GCGCGGTGGCCGAGGGGCGCTTCCGCCAGGACCTCTACTACCGCCTGAACGTGATCGAACTGAAGGTCCCTGCGCTACGT
GAACGACGCGAGGACATCCCGGTGCTGGCCCAGTGCGTGCTGGCACGGATCAGCGAGCAGTGGGGTACCGAACCGCTGGA
ACTGGCGCCGGACGCACTCGAGGTTCTCGCCCGGCATCCCTTCCCGGGGAACGTGCGCGAACTGGAGAACATCCTCGAAC
GCGCGGCCACCCTCAGCGAGGGCCCCACGATACACGCCGACAGCATTGACCTGCCCCGTTCCGCACATGGCGAACCCTTG
CCATCGGCCGAGGCCCCGGGCTTTGTACCACCCCCGCCCCGGCGCGAGATACCGACGGCCACGGCGGACGACGTCGCCCT
GGACCAGCGCCTGGCCGAGCAGGAACGCCAGGCCATCGCCACGGCGCTGCAGCAGACCGGCGGCAACCGCACGGCGGCGG
CGCGCCTGCTTGGGCTCAGCTTTCGCCAGCTGCGCTATCGGCTCAAGAAGCTCGGGATCGAGTAA

Protein sequence : 
MSIRHVLVVDDEPDICELLEITLSRMGIEATTTEHLNGARELLAARDFDLCLTDMRLPDGDGLDLVRHIQGQRPDLPVAV
ITAHGSVDTAVQALKLGAFDFVSKPVDLQQLRELIDTALRMEPAPDLPGALNTDTVPDAETTRIDSPLLGQAPPMQTLRA
TIQKLARSQAPVFIRGESGSGKELVAREIHRLGPRSDRPFVPVNCAAIPGELMESEFFGHRKGAFTGATQDHTGLFQAAS
GGTLFLDEVADLPLPMQVKLLRAIQERAIKPVGGTREIPVDVRLLSATHHDLERAVAEGRFRQDLYYRLNVIELKVPALR
ERREDIPVLAQCVLARISEQWGTEPLELAPDALEVLARHPFPGNVRELENILERAATLSEGPTIHADSIDLPRSAHGEPL
PSAEAPGFVPPPPRREIPTATADDVALDQRLAEQERQAIATALQQTGGNRTAAARLLGLSFRQLRYRLKKLGIE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-107 48
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-107 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TK90_2124 YP_003461350.1 Fis family transcriptional regulator BAC0467 Protein 2e-80 43
TK90_2124 YP_003461350.1 Fis family transcriptional regulator BAC0089 Protein 2e-72 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TK90_2124 YP_003461350.1 Fis family transcriptional regulator VFG1214 Protein 2e-128 60