Gene Information

Name : TK90_0140 (TK90_0140)
Accession : YP_003459392.1
Strain : Thioalkalivibrio sp. K90mix
Genome accession: NC_013889
Putative virulence/resistance : Unknown
Product : thiamine biosynthesis protein ThiC
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0422
EC number : -
Position : 142782 - 144671 bp
Length : 1890 bp
Strand : -
Note : TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; KEGG: hna:Hneap_0500 thiamine biosynthesis protein ThiC

DNA sequence :
ATGAGCGCCATCCCCGAGTCGTTTGCCCGCAAGACCGCCGAGGTCTCCGCGGAGGTCACCCGCCCGTTCCCGAACTCCGA
GAAGCGTTACGTCGAGGGTTCGCGCGCGGACATCCGCGTGCCGTATCGCGAGGTCGCGCAGACGCCGACGATGACCTCCG
GCACCCCCGAAGAGAACCCGCCGATCCCGGTCTACGACACCTCCGGCCCCTACACCGACCCCGACGCAAGCATCGACCTG
CACCGGGGGCTGGCGGACCTGCGCGGCCCCTGGATCGACGAACGCGCGGACACCGAGTGGCTGGACGGCCCGAGCTCCGA
GTACGGCCGCGCCCGCGCCGCCGATCCGGAACTGGCCAGCCTGCGCTTCGGGCACATCCGCCCGCCGCGCCGCGCGCAGG
CCGGCGCGAACGTCTCGCAGATGCACTACGCCCGGAAGGGCATCATCACCCCGGAGATGGAGTACGTCGCGATCCGCGAG
AACAACCGCCTGCAGGAGCTGCGCGCCGACCCGCGCTACCAGAAGCTGCTGCGCCAGCACGCCGGCGAGTCGTTCGGCGC
CTCCATCCCGGATGAAATCACCCCCGAGTTCGTGCGTGACGAGATTGCCCGCGGTCGCGCGATCATCCCCGCCAACATCA
ACCACCCCGAGCTCGAGCCGATGATCATCGGCCGCAACTTCCGGGTGAAGGTGAACACCAACATCGGCAACTCCGCGGTC
ACCTCCTCGATCGAGGAGGAGGTAGAAAAGCTTGTCTGGTCCGCGCGCTGGGGCGGCGACACCCTGATGGACCTGTCCAC
CGGCAAGAACATCCACGAGACCCGCGAGTGGATCCTGCGCAACTCGCCGGTACCGATCGGCACCGTGCCGATCTACCAGG
CGCTGGAGAAGGTCGACGGCAAGCCCGAGGACCTGACCTGGGAGCTGTTCCGCGACACCCTGATCGAGCAGGCCGAGCAG
GGCGTGGATTACTTCACCATCCACGCCGGCGTGCGGTTGCAGTACGTGCCGCTGACTGCTGACCGCGTGACCGGCATCGT
CTCCCGCGGCGGTTCGATCATGGCCAAGTGGTGCCTGGCGCATCACCAGGAGAACTTCCTCTACACCCACTTTGACGAGA
TCTGCGAGATCATGAAGGCCTTCGACGTCTCGTTCTCGCTGGGGGACGGCCTGCGCCCCGGCTGCCTGGCCGATGCCAAC
GACGCCGCCCAGTTCGGCGAGCTGGAGACCCTGGGCGAGCTGACGCAGAAGGCCTGGGCGCACGACGTGCAGGTGATGAT
CGAGGGCCCCGGCCACGTCCCGCTGCAGAAGGTGAAGGAGAACGTCGACAAGGAGCTGGAGGACTGCTTCGAGGCGCCGT
TCTACACCCTTGGCCCGCTGGTGACCGACATCGCCCCGGCCTACGACCACATCACCTCCGGTATCGGCGCGGCCAACATC
GGCTGGTACGGCACCGCGATGCTCTGCTACGTGACGCCGAAAGAACATCTGGGCCTGCCCAACAAGCAGGACGTGCGCGA
CGGCATCATCACCTACAAGATCGCCGCCCACGCCGCCGACCTGGCCAAGGGCTTCCCCGGCGCGCAGCTGCAGGACAACG
CCCTGTCCAAGGCACGCTTCGAGTTCCGCTGGGAGGACCAGTTCAACCTGGCACTGGACCCGGAGCGCGCGCGCGAATTC
CACGACGAGACCCTGCCGAAGGAGGCGCACAAGGTCGCCCACTTCTGCTCCATGTGCGGCCCGAACTTCTGCTCCATGAA
GATCACCCAGGACGTGCGCGACTATGCCGCGGCCCAGGGCATCAGCGCTGACGAGGCCCTGCAGAAGGGCATGCAGGAGA
AGGCGGTGGAATTCGTCGAGAAGGGCGCGGAGATCTACCGCAAGACCTGA

Protein sequence :
MSAIPESFARKTAEVSAEVTRPFPNSEKRYVEGSRADIRVPYREVAQTPTMTSGTPEENPPIPVYDTSGPYTDPDASIDL
HRGLADLRGPWIDERADTEWLDGPSSEYGRARAADPELASLRFGHIRPPRRAQAGANVSQMHYARKGIITPEMEYVAIRE
NNRLQELRADPRYQKLLRQHAGESFGASIPDEITPEFVRDEIARGRAIIPANINHPELEPMIIGRNFRVKVNTNIGNSAV
TSSIEEEVEKLVWSARWGGDTLMDLSTGKNIHETREWILRNSPVPIGTVPIYQALEKVDGKPEDLTWELFRDTLIEQAEQ
GVDYFTIHAGVRLQYVPLTADRVTGIVSRGGSIMAKWCLAHHQENFLYTHFDEICEIMKAFDVSFSLGDGLRPGCLADAN
DAAQFGELETLGELTQKAWAHDVQVMIEGPGHVPLQKVKENVDKELEDCFEAPFYTLGPLVTDIAPAYDHITSGIGAANI
GWYGTAMLCYVTPKEHLGLPNKQDVRDGIITYKIAAHAADLAKGFPGAQLQDNALSKARFEFRWEDQFNLALDPERAREF
HDETLPKEAHKVAHFCSMCGPNFCSMKITQDVRDYAAAQGISADEALQKGMQEKAVEFVEKGAEIYRKT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
thiC YP_001598318.1 thiamine biosynthesis protein ThiC Not tested MDA Protein 0.0 77
BJAB07104_00317 YP_008207782.1 Thiamine biosynthesis protein ThiC Not tested AbaR25 Protein 0.0 72
BJAB0868_00321 YP_008211647.1 Thiamine biosynthesis protein ThiC Not tested AbaR26 Protein 0.0 72