Gene Information

Name : TK90_1232 (TK90_1232)
Accession : YP_003460477.1
Strain : Thioalkalivibrio sp. K90mix
Genome accession: NC_013889
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : -
Position : 1307639 - 1308997 bp
Length : 1359 bp
Strand : +
Note : TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase; KEGG: lhk:LHK_01738 DnaB

DNA sequence :
ATGACTGCCATGACTGCACCGTGGTCACTGGAAGCCGAGCAGGCCGTTATCGGCGGCCTGCTGATCGACAACGGCGCCTG
GGATGACGTGCGCGACCTGGTGGACGAGCCGGACTTCTACCGCCGGGACCACCGGCTGATTTGGCGCGCCATGCGGGCGC
TGGATGACGTGGGCACCCCGTTGGACATCATCACCCTGGCGGAATGGCTGGAGTCGCACGACCAGATGGAGGAAGCCGGC
GGCATGGCCTACCTCGGCACCTTGGCGACCGACACCCCCAGCGCGGCCAACGTTCGCGCCTACGCAGCCATTGTCCGTGA
CAAGGCCCGGCGGCGCTCCCTGATCCAGGCGGCGGGTGAAATCCAGCGCGCCGCCGCCAGCGGTGATGACACCGCCACCG
TCATGGACGAAGCCCAGCGCCTGGTCATGGCCGTGGGCGAATCCGGTGGAGACGGTCCGGTCGAGATCGGCCAGGACATC
CACGGCTGGCTGACGGACCTGGAGCGCCGGCGGCGGACGGGCGAGTCGGCCGGGATCACTACCGGCTTCACCGACCTGGA
CCGAAAGACAACGGGGCTTCATCCGGGCGACTACGTGGTTATCGCGGGCCGGCCGTCGATGGGCAAAACCGCTCTCAGCC
TGGGCATGGCGGAGCATATCGCGGCCACCCACGGGCCGGTCGTGGTGTTCAGCCTCGAAATGCCCAAGTCGCAGCTATGG
GCGCGCCTGGTGGCGTCGCACACAGGCATCGCGCTACCGGCATTCCGAGCGCCCCACCTGCACCCCTACGGCGATCCGGC
GGCGGACTCAATCCGGCGCACGGTTCAGCGGTTGCAATCGCTCCCGCTCCACGTCGATGACTCCAGCCGGGTGACGACCA
GCGACATACGCGCCCGGGCCCGCCGGCTGAAGCGAAAGCATGGGCTTACGGCCGTGGTCGTGGATTACATCGGACTGGTG
ACCCCACCGGCCAGGGAATCCAGGAACCACGAAATCGAGGTCATCAGTCGCGACCTGAAATCGTTGGCCCTGGAGCTTGG
CGTGCCGGTGCTGGCCCTGTCGCAGTTGAACCGAGGACTGGAGCAACGGCCGGACAAGCGCCCGATCATGTCCGACCTGC
GGGACTCCGGCAGCCTTGAGCAGGACGCGGACCTGGTTCTGCTGCTTTACCGCGACGAGGTGTACCGGGAGCGAACCCCC
GACCGGGGCATTGCCGAGATCATCATCGGCAAGCAGCGGAACGGCGAAACCGGAACCGTGCCGCTGGCCTTCCGTGGCGA
GGTGACCCGGTTCGGAGACCTGGACCATCAGACCAGGGCCGCCTGGCTCAGGGAGCGCCGCCGGGCGCGTGGTGAGTGA

Protein sequence :
MTAMTAPWSLEAEQAVIGGLLIDNGAWDDVRDLVDEPDFYRRDHRLIWRAMRALDDVGTPLDIITLAEWLESHDQMEEAG
GMAYLGTLATDTPSAANVRAYAAIVRDKARRRSLIQAAGEIQRAAASGDDTATVMDEAQRLVMAVGESGGDGPVEIGQDI
HGWLTDLERRRRTGESAGITTGFTDLDRKTTGLHPGDYVVIAGRPSMGKTALSLGMAEHIAATHGPVVVFSLEMPKSQLW
ARLVASHTGIALPAFRAPHLHPYGDPAADSIRRTVQRLQSLPLHVDDSSRVTTSDIRARARRLKRKHGLTAVVVDYIGLV
TPPARESRNHEIEVISRDLKSLALELGVPVLALSQLNRGLEQRPDKRPIMSDLRDSGSLEQDADLVLLLYRDEVYRERTP
DRGIAEIIIGKQRNGETGTVPLAFRGEVTRFGDLDHQTRAAWLRERRRARGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 2e-78 45
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 2e-74 43
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 2e-74 43
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 3e-76 43
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 1e-77 43
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 6e-77 43
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 8e-75 41