Gene Information

Name : Alvin_3281 (Alvin_3281)
Accession : YP_003456922.1
Strain :
Genome accession: NC_013862
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 24475 - 24978 bp
Length : 504 bp
Strand : +
Note : TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: vsp:VS_1655 putative DNA repair protein; prophage protein

DNA sequence : 
ATGTCCCATCCCAACCCATGGCGGGTGCTGGAGTCTGATGCCCAGCGTCGTCCCACCCTGAGTTTTACCGAACGCACCCT
GGTGGCCGAGGCCATCGACTGTCTGGAGCGGCACTATCGGGTCGCTCAAGAGGCCCTCACCAGTCCGGACGCCACCCGCG
ACTACCTGAAGTTGCGTCTCTACGGACTGACCTATGAGGTCTTCGCGGTGCTGTTGCTCGATAACCGTCATCGCGTGTTG
CGCTACCAGGAACTGTTTCGCGGTACCATCGACACGGCCTATGTTCATCCCAGGGAAGTGGTGCGCCTCGTCATCGAAAG
TGGAGCGGCAGCGGTCATCTTCGCCCACAACCATCCATCGGGGAGTAGCGACCCGTCCCAGGCCGATCGGACCTTGACCC
GCAAGCTTCAGGACGCCCTGGCGTTGATCGAGGTGCGGGTGCTCGATCACATCATCGTCGGTGAGGGGCGGGGCATGTCG
TTTGCCGAACAGGGTTGGCTCTGA

Protein sequence : 
MSHPNPWRVLESDAQRRPTLSFTERTLVAEAIDCLERHYRVAQEALTSPDATRDYLKLRLYGLTYEVFAVLLLDNRHRVL
RYQELFRGTIDTAYVHPREVVRLVIESGAAAVIFAHNHPSGSSDPSQADRTLTRKLQDALALIEVRVLDHIIVGEGRGMS
FAEQGWL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 2e-32 55
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 3e-30 53
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-32 52
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-32 52
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-32 52
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 1e-23 48
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 1e-23 48
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 1e-23 48
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 2e-23 47
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 2e-23 47
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 4e-24 47
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 6e-24 47
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 6e-24 47
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 4e-23 47
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 9e-24 47
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 9e-24 47
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 2e-23 47
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 2e-23 47
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 1e-23 47
unnamed AAL08475.1 unknown Not tested SRL Protein 1e-23 47
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 1e-23 47
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 2e-23 47
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 1e-22 46
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 1e-22 46
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 8e-27 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alvin_3281 YP_003456922.1 DNA repair protein RadC VFG1119 Protein 6e-33 52
Alvin_3281 YP_003456922.1 DNA repair protein RadC VFG0660 Protein 4e-24 48
Alvin_3281 YP_003456922.1 DNA repair protein RadC VFG1528 Protein 9e-24 47
Alvin_3281 YP_003456922.1 DNA repair protein RadC VFG1678 Protein 4e-24 47
Alvin_3281 YP_003456922.1 DNA repair protein RadC VFG1066 Protein 5e-24 47
Alvin_3281 YP_003456922.1 DNA repair protein RadC VFG1617 Protein 5e-23 46