Gene Information

Name : kdsB (AZL_004340)
Accession : YP_003447616.1
Strain : Azospirillum sp. B510
Genome accession: NC_013854
Putative virulence/resistance : Virulence
Product : 3-deoxy-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1212
EC number : 2.7.7.38
Position : 490147 - 490956 bp
Length : 810 bp
Strand : -
Note : CMP-KDO synthetase

DNA sequence :
ATGCCGACCGCCACCTCCGCCAACCACTCCGCCGCCTCCCCCGGCAAACGCGCCGGCGGCCGTCCCGCCAACCCGGTCGT
GGTGATCCCGGCGCGCATGGCCTCGACCCGGCTGCCCGGCAAGCCGCTGGCCGACATCCTCGGCGCGCCGATGATCGTCC
ATGTGCTGCGCCGCGCCCTGGAGGCGGAGATCGGCCCGGTGGTGGTGGCCTGCGCCGAACCGGAGATCGCCCGCGCGGTC
GAGGCCGCCGGCGGCACCGCCGTGCTGACGCGGCCCGACCATCCCTCGGGCTCCGACCGCATCTTCGAGGCGCTGCGGCT
GATCGATCCGGACGGGCGTCACGACGCGGTGGTGAATGTGCAGGGCGACCTGCCGACCATCGAACCGGAGAGCGTGCGCG
CCGCCTTCGCCCCGCTGGCCGACCCGGAGGTCGACATCGCCACCCTGGTGGCCGAGATCACGCGGGAGGAGGAGCGGACC
GATCCCAACGTGGTAAAGGCGGTGCTGGAACTGCCGGCGGGAGCCCGGCTGGGCCGCGCGCTCTATTTCACCCGCGCCAC
CGCCCCGACCGGCGACGGCCCGCTCCATCACCACATCGGCCTCTACGCCTACCGCCGGGCGGCGCTGGAGCGTTTCGTCT
CGCTGCCGCCCTCGGTGCTGGAGCGGCGCGAAAGGCTGGAACAGCTGCGCGCCCTGTCCAACGGCATGCGCATCGACGCG
GCGGTCGTTGACGCGGTTCCGCTGGGTGTCGATACTCCCGCCGACCTGGAGCGCGCCTGCGCCCTGCTGTCCGGCCGCGA
CGCCGGCTGA

Protein sequence :
MPTATSANHSAASPGKRAGGRPANPVVVIPARMASTRLPGKPLADILGAPMIVHVLRRALEAEIGPVVVACAEPEIARAV
EAAGGTAVLTRPDHPSGSDRIFEALRLIDPDGRHDAVVNVQGDLPTIEPESVRAAFAPLADPEVDIATLVAEITREEERT
DPNVVKAVLELPAGARLGRALYFTRATAPTGDGPLHHHIGLYAYRRAALERFVSLPPSVLERRERLEQLRALSNGMRIDA
AVVDAVPLGVDTPADLERACALLSGRDAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 3e-31 43
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 1e-31 43
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 4e-31 43