Gene Information

Name : tnpB (smi_1601)
Accession : YP_003446703.1
Strain : Streptococcus mitis B6
Genome accession: NC_013853
Putative virulence/resistance : Unknown
Product : transposase, ISSmi2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3666
EC number : -
Position : 1647712 - 1649322 bp
Length : 1611 bp
Strand : -
Note : COG3666

DNA sequence :
ATGATTAGCCTCTTTGTAGACAGTATCCCTAGTCAAGTTCTATTGGAAGAGACCTCTCACACTGGTCGCCCTGCCTTTCA
TCCAGCCATGCTCATGAAGATGACCCTGTTCGCTTACGCTCGTCAAGTGTTCTCTGGACGTAAAATCGTTCAAATGAACT
CAGAAGTCATTCCCATGAAATGGTTGAGCCAAGATACCTATGTTAGCTATAAAACGATTAATAACTTCCGCTCCAGTAAA
CATGCCAACAACCTAATCAAAACTGCTTTTATTTACTTCACTTTACTCATGCGTGAGAATGGGATGATTGAGGATGATGC
CTTGTTCATTGATGGAACAAAACTAGAAGCTGATGCCAACCTCTATTCTTTCACTTGGAAAAGAGCTATTGACAAATATG
AAGCAGCCTTGAATGGGAAAATTTCCCAGCTCTATGACCAGCTGATTCAAGAAGGAGTAAATCTCGCCTTATCTAAAGAA
GAACGGGAAACCAGTCAGGGTTTGGAGGAGCTACTAGAAAAAACGGAGGCTACCTTAGTTGAAATAGAACAAGCTATTGA
AGAAGAGCCTAAAGTGATAAAGGGTGGGTCTGCCAATAGACAAAAACGCCGTCGGATAAAGAAAATCCGTAAGCAATTAA
AGGATGATTTCCTTCCTCGTAAACAGCGATATGAAGAAGCTAGAAAAATTTTAGAAGACCGCAACTCTTTCTCAAAAACG
GATCATGATGCCACCTTTATGCGAATGAAGGAAGACCATATGCAAAATGGGCAACTGAAACCTGGTTATAATGTCCAAGC
GGCTACCAATGGTCAGTATGTCCTTGATTTTGATATCTTTCCAAATCCAACAGACACTCGCACTCTGAAACCTTTCCTCC
AATCGATTCAAACCCTAGACTTATTCAACTATATCGTAGCAGATGCTGGTTATGGTAGCGAAGAAAATTATCGTTTTATC
ATTGATGAATTGGAAAAAATACCGCTTATTCCCTACACCATGTATCAGAAGGAATTGACTAAAAAGTACCAGACGAGCAC
AGATAATCCAATGAACTGGGAATATCTTGAGGACACGGACCAGTTTATAAAGCCCGACGGCGTAGTTTATTCTTTTAAGA
ACTACTCTAGTCGAACTGACAAGTATGGCTTTCAACGTGATTTCAAGATTTATGAGGCTGATAAAGTTCAAGACACTCCA
GAGTTAGAACAGTTGGCTAAAACAGATAGTGGAAACCAGAAACAAATCCATTATAATCCAACTTGGAATTACTTTAAGGA
ACTCCTTAAGCAAACATTACATAGTGAAGAAGGCTCTCGAATCTATGCCAAACGGAAAATCGATGTTGAACCCGTTTTTG
GTAGATTGAAGAGTGTTTTTGGCGTGCGCAGAGTGCATGTCAGAGGGAAACAAGCTGTCTCAACAGAAATAGGATTCATC
TTTATGAGCATGAATCTCACCAAGTTGGCCAAGAATCTAGCCTCTAAAACATCCACTATTCAAAAACCACACAGTATTTC
TTTCAGCTTGATTGGATTCAAGACTGGAATCACTGTGTGGTTTTATTTAGAAGCTAGTTTTTGCCCAGCCTCGTCTTTTC
CTTTTGTTTAA

Protein sequence :
MISLFVDSIPSQVLLEETSHTGRPAFHPAMLMKMTLFAYARQVFSGRKIVQMNSEVIPMKWLSQDTYVSYKTINNFRSSK
HANNLIKTAFIYFTLLMRENGMIEDDALFIDGTKLEADANLYSFTWKRAIDKYEAALNGKISQLYDQLIQEGVNLALSKE
ERETSQGLEELLEKTEATLVEIEQAIEEEPKVIKGGSANRQKRRRIKKIRKQLKDDFLPRKQRYEEARKILEDRNSFSKT
DHDATFMRMKEDHMQNGQLKPGYNVQAATNGQYVLDFDIFPNPTDTRTLKPFLQSIQTLDLFNYIVADAGYGSEENYRFI
IDELEKIPLIPYTMYQKELTKKYQTSTDNPMNWEYLEDTDQFIKPDGVVYSFKNYSSRTDKYGFQRDFKIYEADKVQDTP
ELEQLAKTDSGNQKQIHYNPTWNYFKELLKQTLHSEEGSRIYAKRKIDVEPVFGRLKSVFGVRRVHVRGKQAVSTEIGFI
FMSMNLTKLAKNLASKTSTIQKPHSISFSLIGFKTGITVWFYLEASFCPASSFPFV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAC67565.1 hypothetical protein Not tested Type-IVc SCCmec Protein 8e-74 47
tnp YP_254534.1 IS1272 transposase Not tested ¥ðSh2 Protein 7e-78 46
SAUSA300_0034 YP_492755.1 IS1272, transposase Not tested Type-IV SCCmec Protein 9e-90 45
SACOL0036 YP_184947.1 IS1272 transposase Not tested Type-I SCCmec Protein 4e-91 44
SAMSHR1132_00350 YP_005324559.1 putative transposase Not tested Type-IIIinv SCCmec Protein 4e-91 44
MW0034 NP_644849.1 hypothetical protein Not tested Type-IV SCCmec Protein 4e-91 44
unnamed BAA86649.1 hypothetical protein Not tested Type-I SCCmec Protein 3e-91 44
SE0076 NP_763631.1 transposase Not tested SCCpbp4 Protein 1e-86 42