Gene Information

Name : Alvin_0008 (Alvin_0008)
Accession : YP_003442012.1
Strain : Allochromatium vinosum DSM 180
Genome accession: NC_013851
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 9272 - 9925 bp
Length : 654 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eba:ebA6806 ABC transporter, ATP-binding protein

DNA sequence : 
ATGCTCGAAATCTGCGACCTTTACCGCCAGTTCAATGGCCGCCCGGTCCTTCAGGGCATCTCAATGCGTCTGAAGCCTGG
TGAATATGTCGCCATCACCGGCGAGTCCGGCGTCGGGAAGTCCACGCTGTTGAATGTGATCGCCGGTCTGGATCGGCCCG
ATCGCGGCCGTCTGGTGCTCGACGGCGAAGACTACGCGGCGCTCGACGAGGACGCCTTGACACGCCTGCGGCGCGACAAA
CTCGGCTTCGTCTTCCAGGCGTTCCATATCCTGCCGCATCTCACACTGCGTCAGAATGTGGCTCTACCGCTCTGGCTCAA
GGGTCAGGGCGGCCGGCGGGCGGATCGTCAGGCCGAGCATCTGCTCGACGCCGTGGGGTTGGGCGACCGTGCCGAGAGCT
GGCCACGCGAGCTGTCCGGGGGCGAGATGCAGCGCGTCGCGATCGCCCGCGCTCTGGCACACAAGCCACGCCTGATTCTG
GCCGACGAACCCACGGGAAACCTGGATCCCACCAACGCGGCTCGCGTGTTGAGGTTGCTGGGCGAGCGGATCCGTAGCGC
CGGAGCCATGGGAATCCTGGTCACGCACTCCCCGGAAGCGGCCAGGAGCGCCGATCGCGTGTTGCAGCTCACGCCAGAAG
GACTGCACGAGTGA

Protein sequence : 
MLEICDLYRQFNGRPVLQGISMRLKPGEYVAITGESGVGKSTLLNVIAGLDRPDRGRLVLDGEDYAALDEDALTRLRRDK
LGFVFQAFHILPHLTLRQNVALPLWLKGQGGRRADRQAEHLLDAVGLGDRAESWPRELSGGEMQRVAIARALAHKPRLIL
ADEPTGNLDPTNAARVLRLLGERIRSAGAMGILVTHSPEAARSADRVLQLTPEGLHE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-32 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-32 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-32 41
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alvin_0008 YP_003442012.1 ABC transporter NC_008702.1.4606598. Protein 1e-31 46
Alvin_0008 YP_003442012.1 ABC transporter CP001581.1.gene798.p Protein 3e-37 45
Alvin_0008 YP_003442012.1 ABC transporter NC_012469.1.7686878. Protein 1e-37 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alvin_0008 YP_003442012.1 ABC transporter VFG2059 Protein 4e-18 46