Gene Information

Name : Alvin_3100 (Alvin_3100)
Accession : YP_003445031.1
Strain : Allochromatium vinosum DSM 180
Genome accession: NC_013851
Putative virulence/resistance : Virulence
Product : polysaccharide biosynthesis protein CapD
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1086
EC number : -
Position : 3495915 - 3497768 bp
Length : 1854 bp
Strand : +
Note : PFAM: polysaccharide biosynthesis protein CapD; KEGG: eba:ebA5907 putative nucleoside-diphosphate sugar epimerase

DNA sequence : 
ATGACCCGGTGGTTACAGCGCGCCCGCTCGCGCCTGCTGGTGTTCCTGCACGACATGCTGATGATCCCGGCGGCCTGGGG
TCTGGCCTATTGGATGCGCTTCAACCTGGCCTATGTGCCGCCTGAGTTCATCGAGGAGGCCGTCGACACCCTGCCGCTGG
TGGTGCTGGTGATCGGTCCGGTCTACTGGGCCTTCGGTCTCTATCGGGGTGTGTGGCGCTTCGCCTCGCTGAACGATCTG
GTGCGCATCGCCCTGGCGGTGCTGGTCGGCACCGCGCTGCTGCTGTTCGTGCTGTTCGCGCTCAATCGCATGGCCTATGT
GCCGCGCTCGCTGCCGGTGCTGTTCGTGATCTTTCAGCTGATGCTGCTGGCCGGGCCGCGACTGCTCTATCGCTGGCTGA
AGGATCGGCGGCTGGATTTCAGCGGCGGTCAGCGCGTGCTGATCGTCGGCGCCGGACGCGCGGGCGAAATGCTGGTGCGC
GATCTGCTGCGCGATCGGCAGTGCGGCTATGTGCCCGTGGCCTTCGTCGACGACAAGCCGCGCCGTCAGGGCGGTGTGGT
GCATGGCGTGCCGATCCGGGGCACGACCGACGACATCCCGCGTCTGGTCGAACTGTTCGGGATCGATGTGATCCTGCTGT
CGGTGCCCAGTGCCTCGGCGCAGCAGATGCAGCGGCTGGTCGGTCTCTGCGAAGCGGCCGGACGCCCGTTTCGCACCGTG
CCCCAGACCAAGGAGCTGATGGCCGGGCGCGTGGCGGTGAATCAATTACGGGCGGTCTCGATCGAGGATCTGCTGGGACG
CGATCCTGTGACCCTGGACTGGGCCTCGATCGAACAGGGACTGGCCGGGCGTGTGGTCCTGGTCAGCGGGGCGGGAGGCT
CGATCGGCTCGGAGCTGTGCCGTCAGTTGTGCCGCTGCGCGCCGCGCCTGCTCATTCTGGTCGATCACAGCGAATACAAC
CTCTATCGCATCGAGACCGAGCTACTGGACGGACCCGAGCCGCCGCCCTTGTCGCGCCATCTGATCGATGTGACCAACGC
GACGGCGCTCGACCGGCTCTTCGCGCAGCGGCGTCCCGATGTGGTGTTCCATGCGGCGGCCTACAAGCACGTTCCGCTGT
TGCAGGATCAGGTGCTGGCGGCACTCGATAACAATGTACTGGGGACGCGCACCATCGCGGCCGCCGCCGACGCCTGGGGC
TGCGAGCGTTTCGTGCTGATCTCGACCGACAAGGCGGTCAATCCGACCAATGTGATGGGGGCGAGCAAGCGCTTCGCGGA
GCTGATCTGTCAGGACATGCAGCGGCGCTCGGCCTGTCGCTTCATGACGGTGCGCTTCGGCAATGTGCTGGGGTCGGCCG
GGAGCGTGGTGCCGCGCTTCCAGCAGCAGATCGAGCGTGGCGGGCCGCTGACCGTGACCCATCCCGAGATCGAGCGCTTC
TTCATGACCATTCCGGAGGCCTGTCAGCTCATCATGCAGGCGGCCGTGATCGGCCAGGGCGGCGAGACCTTCGTGCTCGA
CATGGGCGAGCCGGTGAAGATCCGCTATCTGGCCGAGCAGATGATCCGGCTGTCGGGGCGTGAGCCGGGACGCGACATTC
GCATCGAATACACAGGTCTGCGTCCGGGTGAGAAGTTGTACGAAGAGTTGTTCTATCCGACCGAGGGTTTTGCCGACACG
CCGCATCCACGCATCCACATCGCGCGCTGTGCCGAGATCCTGGAGGCCGGCGTGCTCGCGGCGGCGCTCAGTGAGTTGAA
GGGCGTGTTGAGCGCGCAGGACGAGCACGGTGCCATGGCGCTGCTGACACGCCTGGTGCCCATTGGGGTCGCAGACTCTG
ACATGCCCAACTGA

Protein sequence : 
MTRWLQRARSRLLVFLHDMLMIPAAWGLAYWMRFNLAYVPPEFIEEAVDTLPLVVLVIGPVYWAFGLYRGVWRFASLNDL
VRIALAVLVGTALLLFVLFALNRMAYVPRSLPVLFVIFQLMLLAGPRLLYRWLKDRRLDFSGGQRVLIVGAGRAGEMLVR
DLLRDRQCGYVPVAFVDDKPRRQGGVVHGVPIRGTTDDIPRLVELFGIDVILLSVPSASAQQMQRLVGLCEAAGRPFRTV
PQTKELMAGRVAVNQLRAVSIEDLLGRDPVTLDWASIEQGLAGRVVLVSGAGGSIGSELCRQLCRCAPRLLILVDHSEYN
LYRIETELLDGPEPPPLSRHLIDVTNATALDRLFAQRRPDVVFHAAAYKHVPLLQDQVLAALDNNVLGTRTIAAAADAWG
CERFVLISTDKAVNPTNVMGASKRFAELICQDMQRRSACRFMTVRFGNVLGSAGSVVPRFQQQIERGGPLTVTHPEIERF
FMTIPEACQLIMQAAVIGQGGETFVLDMGEPVKIRYLAEQMIRLSGREPGRDIRIEYTGLRPGEKLYEELFYPTEGFADT
PHPRIHIARCAEILEAGVLAAALSELKGVLSAQDEHGAMALLTRLVPIGVADSDMPN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 4e-86 43
cap1D AAA64643.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 2e-86 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alvin_3100 YP_003445031.1 polysaccharide biosynthesis protein CapD VFG1300 Protein 1e-87 42
Alvin_3100 YP_003445031.1 polysaccharide biosynthesis protein CapD VFG0029 Protein 1e-77 41