Gene Information

Name : Alvin_2932 (Alvin_2932)
Accession : YP_003444867.1
Strain : Allochromatium vinosum DSM 180
Genome accession: NC_013851
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 3310719 - 3311468 bp
Length : 750 bp
Strand : -
Note : TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: tgr:Tgr7_1331 flagellar biosynthetic protein FliP

DNA sequence :
ATGAAACGGCTCGCGCGCTGGGGACTGGTGCTGGCCGGACTGCTCGCGCCGGGCCTCGTCCTGGCCCAGATCGGCGGGCT
GAACGCCGTGACCGTCACGACCGCGCCCGACGGCGGTCAGGTCTACTCGGTTACGCTCCAGATCCTGATCATCATGACGC
TGATGACGCTGCTGCCGTCGGCGCTGATCATGATGACTTCATTCACGCGCATCATCATCGTGCTGGGCATCCTGCGTCAG
GGGTTGGGGACGACCCAGACGCCCTCCAACCAGATCCTGCTGGGTCTGGCGTTGTTTCTGACCCTGTTCGTGATGTCGCC
GATCTTCCAGGAGATCTACGACACCGCCATCCAGCCCTACATGGAAGAGCAGCTCGGCACCGAGGAGGCGCTCGCCAAGG
CCGTCAAGCCGCTGCGCACCTTCATGCTGGCCCAGACACGCGAATCGGATCTGGCGCTCTTCGCCGGCATCCGGGGCATC
GACGGCTTTGAGTCGCCGGACGACATTCCGCTGACGCTGCTGATTCCGTCCTTCGTCATCAGCGAGCTGAAGACGGCCTT
CCAGATCGGGTTCCTGATCCTGATCCCCTTTCTCATCATCGATCTGGTGGTCGCCAGCGTGCTGATGTCCATGGGTATGA
TGATGCTCTCGCCCCTGATCATCTCGTTGCCGTTCAAGCTGATGCTGTTCGTGCTGGTCGATGGCTGGTCGCTGCTGCTC
GGAACCCTGGCGCGCAGTTTCTATACGTGA

Protein sequence :
MKRLARWGLVLAGLLAPGLVLAQIGGLNAVTVTTAPDGGQVYSVTLQILIIMTLMTLLPSALIMMTSFTRIIIVLGILRQ
GLGTTQTPSNQILLGLALFLTLFVMSPIFQEIYDTAIQPYMEEQLGTEEALAKAVKPLRTFMLAQTRESDLALFAGIRGI
DGFESPDDIPLTLLIPSFVISELKTAFQIGFLILIPFLIIDLVVASVLMSMGMMMLSPLIISLPFKLMLFVLVDGWSLLL
GTLARSFYT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-08 43
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-08 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-08 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-07 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 1e-06 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 8e-07 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 8e-07 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 6e-07 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 1e-06 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 0.046 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 0.037 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alvin_2932 YP_003444867.1 flagellar biosynthetic protein FliP VFG1259 Protein 1e-36 66
Alvin_2932 YP_003444867.1 flagellar biosynthetic protein FliP VFG2016 Protein 6e-35 64
Alvin_2932 YP_003444867.1 flagellar biosynthetic protein FliP VFG2494 Protein 1e-37 59
Alvin_2932 YP_003444867.1 flagellar biosynthetic protein FliP VFG2338 Protein 5e-37 58
Alvin_2932 YP_003444867.1 flagellar biosynthetic protein FliP VFG0519 Protein 4e-07 41
Alvin_2932 YP_003444867.1 flagellar biosynthetic protein FliP VFG0188 Protein 1e-09 41