Gene Information

Name : Alvin_0211 (Alvin_0211)
Accession : YP_003442210.1
Strain : Allochromatium vinosum DSM 180
Genome accession: NC_013851
Putative virulence/resistance : Virulence
Product : capsule polysaccharide biosynthesis protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG3563
EC number : -
Position : 226010 - 228010 bp
Length : 2001 bp
Strand : -
Note : PFAM: Capsule polysaccharide biosynthesis protein; KEGG: bmj:BMULJ_00622 putative capsule polysaccharide export protein

DNA sequence : 
ATGATTGGAGTTCTTTCACGCGGGATCCTGCGGATTCCTGGGCTGGAGGTCGTGCTTGGAGAGCCTGTCGTCGCCGTGAG
TCCATGGCGCGCTCGCCCGGAGCTGTCGGCTATTGCAGGCTGGGGCCTGAAAGCGACCTCGCGCCGGGCGCGTGACTATG
CGCGCCGCCATGGTCTGCCCTATCTGGCGCTGGAAGACGGATTTCTGCGCTCGGTCGGACTCGGCAACCAGGATCCACCG
CTGTCGCTGATCGTCGACGACCTGGGTGTCTACTATGATGCAACGCGCCCATCGCGTTTGGAAACACTGATCCGGCATCC
GCTGTCCGACACCGAGACCGCGCGCGCGCGGTCCTTGCGCTCGGCCTGGTGCGCGGCGCGGGTATCGAAGTACAACCATT
TGCGCGAAGAGCGCGAACCCCTGCCCTCCCCCGCCGTACTGGTGGTCGATCAGACCTTTGGCGATCCGGCCATCACCCAT
GGTCTGGCCGACTCGAAAAGCTTCCAGCACCTGCTGGAAGCGGCACTGGACGAGAATCCCCGGGCCGTCATTCTCGTAAA
GATCCATCCCGACGTCTTCGCCGGACGCAAGCGCGGTCATTTCGATCCCGAGCGGCTCGCCAGGCTGGAGCGGGTGCGGC
TGCTGACACGCGATCTGCATCCGGTATCGCTCCTGGAACGGGTCGAGACGGTTTACACGGTCACCTCACAGCTCGGCTTC
GAAGCGCTGCTCTGGGGGCGGCGGGCGCGTGTCTTCGGGATGCCATTCTACGCCGGCTGGGGGCTGACCGAGGACGAGTT
GCCCAGGCTGGAACGACGGGCGCCGGTCGGCCTGGAGTCCCTGATCCATGGAGCACTGATCGCCGCTCCACGTTATCTGG
ATCCTGAAACCGGCGAACGCTGCGAGATCGAGCGCGTGCTGGAGTGGATGGGTTTGCAGCGACGGATGCGCGAGCGCTTT
CCCGAAACGATCCGGGCACTGAATTTTTCGGCTTGGAAACGTCCGCTGGTACGACGCTTCATGCAGGGGAGCCGGGTCGA
ATTCGAGACCAGACCTCATGATGCAAGACAGATCAAGGGCGATGCTCGCATCCCGTTGGCGGTGTGGGGTCTGGCGGCGG
CGCCCGAAGGTCGGACCATCCTGCGCCTGGAGGATGGCTTCTTGCGCTCGGTGGGCCTGGGGGCGGATCTGGTCGAGCCG
TTGTCCTGGGTCATCGATCAGCGTGGGCTCTACTATGATCCGAGCCGACCCTCAGATCTGGAGATCCTGCTCGAAACCCA
GGTCTTCGACGAGGCGCTACTGGAGCGTGCGCGAAGATTGCGCGAGCGGATCGTCGCCTCGGGCTTGACCAAGTACAACG
TCGGCGCGGCGCACTGGCAACGTCCGGCGACCGCCAGACGGGTGATCCTGGTGCCGGGACAGGTGGAGACGGATGCCTCG
ATCCGGCTCGGCGCGCCTGGCATCCGGCACAATCTGGAGCTGTTGCGGGCCGTGCGCGAAGCCCATCCCGACGCCTATGT
TCTCTACAAGCCGCATCCGGATGTCACGGCCGGCTTGCGCGCGGCTGGTGAGCACGAGTCTGCCGCACGCACTTGGTGTG
ACGAACTGATCGTCGATGTGCCCATGGCGACCTTGCTCGATGCGGTCGATGAACTGCATGTACTCACCTCGCTGGCAGGC
TTCGAGGCGCTGCTGCGCGGCAAACGGGTCGTCTGTCATGGTCAGCCGTTCTATGCCGGCTGGGGGCTGACCGAGGACCG
TTTGCCCCCGGCGCGCCGCACGCGTCGCCTGTCGCTGGAGATGTTGGTGGCCGGCGCGCTTCTGCTCTATCCGACCTATG
TCAGTCGGGTGACGAGCCGCTTCACGACCGCCGAGCACGCGCTCGACGAGCTGCTGGAATGGCGCGCGCGGGGCGAGCGA
CTGACGTTTTGGCGCCGGGTGTTCGTGCGTCCGGTGCTGGGACGGCTGGCCGCCCTGCGCGACCGGCGTCCAAGCGGCTG
A

Protein sequence : 
MIGVLSRGILRIPGLEVVLGEPVVAVSPWRARPELSAIAGWGLKATSRRARDYARRHGLPYLALEDGFLRSVGLGNQDPP
LSLIVDDLGVYYDATRPSRLETLIRHPLSDTETARARSLRSAWCAARVSKYNHLREEREPLPSPAVLVVDQTFGDPAITH
GLADSKSFQHLLEAALDENPRAVILVKIHPDVFAGRKRGHFDPERLARLERVRLLTRDLHPVSLLERVETVYTVTSQLGF
EALLWGRRARVFGMPFYAGWGLTEDELPRLERRAPVGLESLIHGALIAAPRYLDPETGERCEIERVLEWMGLQRRMRERF
PETIRALNFSAWKRPLVRRFMQGSRVEFETRPHDARQIKGDARIPLAVWGLAAAPEGRTILRLEDGFLRSVGLGADLVEP
LSWVIDQRGLYYDPSRPSDLEILLETQVFDEALLERARRLRERIVASGLTKYNVGAAHWQRPATARRVILVPGQVETDAS
IRLGAPGIRHNLELLRAVREAHPDAYVLYKPHPDVTAGLRAAGEHESAARTWCDELIVDVPMATLLDAVDELHVLTSLAG
FEALLRGKRVVCHGQPFYAGWGLTEDRLPPARRTRRLSLEMLVAGALLLYPTYVSRVTSRFTTAEHALDELLEWRARGER
LTFWRRVFVRPVLGRLAALRDRRPSG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsC YP_854335.1 capsule polysaccharide export protein KpsC Not tested PAI I APEC-O1 Protein 3e-101 44
kpsC AAZ04470.1 capsule polysaccharide export protein Virulence PAI I APEC-O1 Protein 2e-101 44
lipA NP_273145.1 capsule polysaccharide modification protein Not tested IHT-A Protein 7e-115 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alvin_0211 YP_003442210.1 capsule polysaccharide biosynthesis protein VFG0259 Protein 3e-115 43
Alvin_0211 YP_003442210.1 capsule polysaccharide biosynthesis protein VFG0704 Protein 4e-96 42
Alvin_0211 YP_003442210.1 capsule polysaccharide biosynthesis protein VFG0692 Protein 1e-112 41