Gene Information

Name : Alvin_0209 (Alvin_0209)
Accession : YP_003442208.1
Strain : Allochromatium vinosum DSM 180
Genome accession: NC_013851
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 224227 - 224916 bp
Length : 690 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tgr:Tgr7_1305 polysialic acid transport ATP-binding protein

DNA sequence : 
ATGATCGAAGTCAGGAGCGTCTACAAACGCTATCACACGCGTAATCATCAGGCGGCCGACTGGGTCTTGCGTGATGTGAA
TTTCCACTTGCCGCCTAGTGTGAGTCTCGGTGTCGTGGGGGGCAATGGCGTGGGCAAATCGACGCTGTTGCGTCTGATCG
GCGGTATGGATCATCCTGATCGCGGCGAGGTGATTCGCCGTTGCCGTGTGTCATGGCCGATCGGTTTGACCGGTGGGTTC
CAGGGATCCATGACCGGACGCCAGAACGTCAAGTTCATTGCTCGCATCCATGGTGATACAGACCGCATCCAGCAAGTGGT
CGATTTCGTACAGGACTTCGCCGAGATCGGCAAGGCGTTCGATGAGCCGATCAAGACCTATTCCAGTGGCATGCGCAGTC
GTCTCGCTTTTGGGCTGTCACTGGCCTTCGAATTCGACGTCTATCTCTCCGACGAAGCCACAGCCACCGGTGACGCCTCG
TTCAAGGCCAAGGCCAAGCAGGCCTTCGACGAGCGGGTCGGCAAGGCCAGTATCATCATGGTCTCGCACAGTGAGGGCAT
TCTGCGCGATCTCTGCCAGGCGGGTCTCTGGCTGCGTAAGGGCGAGGCGATCTGGTTCGATGACATCGCCGATGCGCTGG
CGGCTTATCATGAGAGTATCGGGCAAGTCAAACCACGGAAAGCCGCATGA

Protein sequence : 
MIEVRSVYKRYHTRNHQAADWVLRDVNFHLPPSVSLGVVGGNGVGKSTLLRLIGGMDHPDRGEVIRRCRVSWPIGLTGGF
QGSMTGRQNVKFIARIHGDTDRIQQVVDFVQDFAEIGKAFDEPIKTYSSGMRSRLAFGLSLAFEFDVYLSDEATATGDAS
FKAKAKQAFDERVGKASIIMVSHSEGILRDLCQAGLWLRKGEAIWFDDIADALAAYHESIGQVKPRKAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 1e-47 50
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 5e-47 49
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 8e-36 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alvin_0209 YP_003442208.1 ABC transporter VFG1449 Protein 5e-48 50
Alvin_0209 YP_003442208.1 ABC transporter VFG0258 Protein 3e-36 45
Alvin_0209 YP_003442208.1 ABC transporter VFG0696 Protein 2e-35 43
Alvin_0209 YP_003442208.1 ABC transporter VFG2563 Protein 5e-31 41