Gene Information

Name : Alvin_1184 (Alvin_1184)
Accession : YP_003443155.1
Strain : Allochromatium vinosum DSM 180
Genome accession: NC_013851
Putative virulence/resistance : Virulence
Product : putative Fis family two component sigma54 specific transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1372952 - 1374268 bp
Length : 1317 bp
Strand : +
Note : PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: psa:PST_3646 two-component response regulator PilR

DNA sequence : 
ATGTCCAGACCCCTGGCGCTCGTCGTCGACGACGAAGCCGACATCCTCGACCTGATCCGCATCACGCTCGGGCGCATGAA
TGTGTCGGCGGTGACGGCGCTGACGGTCGCCGAGGCCAAGCTCCAGCTGGAGCGCCATCGGCCCGATCTCTGTCTCACCG
ATCTGAGTCTGCCGGACGGCACCGGACTCGATCTGCTGCACCACATCAACACCCATCACCCCGATCTGCCGGTGGCCATG
ATCACCGCGCACGGCAACATGGAATCGGCTGTCGCCGCCATGAAGGCCGGCGCCTTCGATTTCGTCGCCAAGCCGGTCGA
TCTGTCGGCCCTGCGCAACCTCGTCGAATCGGCGCTCAGACTGCGCGGACGGGCTACGCCGACCGAGGAACGCACCGATT
CCGAGCCGCCCCTGCTCGGCGACTCACCGGCCATGCAGCAGATTCGCGCCCTGATCGCCAAGCTCGCCCGCACCCAGGCG
CCGGTCTTCATCACCGGCGAGAGCGGCACCGGCAAGGAGCTGGCCGCGCGTCTGATCCATGCTCAGGGGCCGCGTCGCGA
TGGTCCGTTCGTGCCGGTCAACTGCGGGGCCATCCCGCACGATCTGGTCGAGAGCGAGCTGTTCGGGCACAAGAAAGGCA
GTTTCTCCGGCGCGCTGGCCGACAAGGACGGGCTGTTCCAGGCGGCGGCCGGCGGGACGCTCTTTCTCGACGAGCTGGCC
GATCTGCCGCTGCCGGCGCAGGTCAAGCTGTTGCGTGCCATCCAGGAGAAGTGCGTGCGTCCGGTCGGTGCCGCGCGCGA
AGTGCCGGTCGATGTGCGGATCATCAGCGCCAGTCATCGCGATCTCGCTCAGGAGGTCGAGAAGGGGCGCTTCCGGCAGG
ATCTCTTCTATCGGATCAATGTCATCGAGCTGCGGCTGCCGGCGCTACGCGAGCGTCCCGAGGACATCCGTCCGCTGGCC
GTCCATATCCTGCGGAAACTCGCTCGGGCGGCGAGTGAGCCGACGGCGGTCGAACCATGGCTCTCCGAGGAGGCCGGCGC
GGCACTCATGCGCTATGCCTTCCCCGGCAATGTGCGCGAGCTCGAAAACATCCTGGAACGCGCCGTGGCGCTGTGCGAGG
GCGAGCGCATCGAGGTCGGGGATCTCTATCTGCCTGTCAATGAGCGCGCAGGCGCGCTCGAATCCAGTGGGGCGGCGCGG
GTGGCGCTCGATCAGACACACCTGAATCAGGCGACCGCCCGCGCGCTCGGTATGACTCCGCTGGCGTTCAGATATCGTTT
GGCCAGGCTCGGGATCGATCGATGTGAGGCGGCCTGA

Protein sequence : 
MSRPLALVVDDEADILDLIRITLGRMNVSAVTALTVAEAKLQLERHRPDLCLTDLSLPDGTGLDLLHHINTHHPDLPVAM
ITAHGNMESAVAAMKAGAFDFVAKPVDLSALRNLVESALRLRGRATPTEERTDSEPPLLGDSPAMQQIRALIAKLARTQA
PVFITGESGTGKELAARLIHAQGPRRDGPFVPVNCGAIPHDLVESELFGHKKGSFSGALADKDGLFQAAAGGTLFLDELA
DLPLPAQVKLLRAIQEKCVRPVGAAREVPVDVRIISASHRDLAQEVEKGRFRQDLFYRINVIELRLPALRERPEDIRPLA
VHILRKLARAASEPTAVEPWLSEEAGAALMRYAFPGNVRELENILERAVALCEGERIEVGDLYLPVNERAGALESSGAAR
VALDQTHLNQATARALGMTPLAFRYRLARLGIDRCEAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-90 47
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-90 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alvin_1184 YP_003443155.1 putative Fis family two component sigma54 specific transcriptional regulator BAC0467 Protein 7e-67 46
Alvin_1184 YP_003443155.1 putative Fis family two component sigma54 specific transcriptional regulator BAC0089 Protein 2e-72 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alvin_1184 YP_003443155.1 putative Fis family two component sigma54 specific transcriptional regulator VFG1214 Protein 1e-116 58
Alvin_1184 YP_003443155.1 putative Fis family two component sigma54 specific transcriptional regulator VFG1249 Protein 3e-64 43
Alvin_1184 YP_003443155.1 putative Fis family two component sigma54 specific transcriptional regulator VFG0116 Protein 3e-60 42