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Name : Kvar_2589 (Kvar_2589) Accession : YP_003439511.1 Strain : Klebsiella variicola At-22 Genome accession: NC_013850 Putative virulence/resistance : Virulence Product : fimbrial biogenesis outer membrane usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 2699424 - 2701958 bp Length : 2535 bp Strand : - Note : PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: kpe:KPK_2634 outer membrane usher protein LpfC DNA sequence : ATGATGATGGCAATGGATTATATAAAAGTACGATCTCCACGGTTGGCATTGTTGATAACCATCGCGCTCTTCGGTAATAC ACAAAATAGCTATAGTCGCGATTTTTTTAACCCAGAGCTGGTTGAACTGGATAATCCAGGGACAGAAAGAGTCGATCTTT CAGGTTTTGAATCTGGTGCGCAAGCCCCCGGGAATTATCATGTTGATGTCGTCCTGGACGATCAGTTAGTCGATACTCGC GATATCATGTTTGTTTTGCTGAAAGAACCTGGCGGTGATGAAAAATTAGTCCCCTGTTTATCCATTGAGCAATTAGCAAG CTGGGGAGTCAAGACTGGACTTTTTCCTGCGTTAAAGGGAGAAACCTCCTGTGCGAACCTGTCCGCCATTCCTCAGGCCA GTACAGATTTCCAGTTTGCCATGCAGCGTCTGGTATTGAGCATTCCGCAAGCGGCAATCTCAGCGCAAGCTCGTGGATCG GTGCCACCGGATCGCTGGGATGAAGGGATTAACGCCGCCCTGCTTAACTACAGTCTGAGTGGGGCGAATAACTGGGCCAA AAATAACAACAGCAGCAACAGTGATAGCCAGTATGCCAACCTGCGTCCGGGAGTAAACATCGGCCCCTGGAGGTTAAGAA ATTACACCACCTGGTCGCGAGATTCACAGGGCCACGATGCCTGGGACACGGTTTATACCTATGCACAACGTACGATAATC CCGTTAAAGTCGCAGCTCACACTGGGTGACAGTTCTGCCCCGGCAGATGTTTTCGACAGTATGCCTTTCCGGGGAGGACA ACTTGCTTCCGATGATGACATGCTGCCCGACTCCCTTAAGGGCTATGCCCCTGTGGTGCGTGGTATCGCCCGGACCAATG CCCAGGTGATCATCCGCCAGAATGGCTATCAGATTTACCAGAGCTTTGTGGCGCCGGGCGCGTTTGAAATTACGGACATG TATCCTACCGGCGGCGCCGGCGATCTTGATGTCACGATTAAAGAGGCTGATGGTAGTGAGCAGCACTTTAGCGTGCCATT TGCCTCACTTCCCGTATTACAGCGTGAAGGCCGAATAAAATATGCGTTAACGGGCGGCCAATATCGTTCGTACAACGGCA GCGTGGATAAGACACCCTTTGGCCAGATGAGCGTTATTCTCGGCTTGCCCTACGGGTTCACGTTTTACGGTGGATTGCAG GAGTCGAGTAAATATCAGTCGCTTGCCGCGGGCGTGGGTAAAAACATGGGTGACTTTGGCGCTATCTCCAGCGACATCAC CCAGGGCTGGTCCACGCCGTACAATATGCCGAAATCCAACGGTCAATCCTGGCGGGCTCGATACAGTAAAAACTTTGCTT CAACAGGCACTAACTTTGCGATTGCCGGCTACCGCTATTCGACCAGCGGCTACTATGGCATGCAGGAGGTCCTTGATTCT TATGGTGACAGTAATGCGCTCCAGGATAGACGCCGAAACCGTGCGGAGCTGACGTTGAGCCAGGGGTTGGGAGATAATCT GGGATCGTTGATGCTGAACGCCTCGCATGAAGATTACTGGAATTCAGGTAAGGCGATGGAATCCTGGAGCGTTGGGTATA ACAACTACTGGCACAGTATCAGTTACGGTCTGACATGGACCCTGAGCAGGAATGGTAGTACGGGATCGTACAGCGCTCAC CAGAGCGACGGTAAAAACCAGATGCTGGCGCTAAATATCAGCATCCCGCTGGAAAAACTCTTGCCGCAGACATGGGCAAA CTATGGCATGAATGCCAGCAAGCATAACGGTACGACACACAGTGTTGGGTTGAATGGCGTTGCGATGCCGAATAATGCGC TTAACTGGAATATTCAACAGGGTTACGGCACTCACGACGTGGCCTATACCGGCAATATGAATGGTGATTATCGAGGCACC TATGGCGAACTGACGGCCGGGTACAGCTATGACAAAAATACCGACCGTCTGAATTATGGGATTCAGGGAGGCGTGGTTGC GCATGCCAATGGCGTGACGTTCTCTCAGCCACTGGGTGAAACCAACGTGCTGATTGCTGCCCCCGGGGCTGCCGGTGTAG GAATCCAGAATATGACCGGCGCGACAACCGATTATCGCGGATACACGCTTGCCTCTAACTTAATGCCTTATCGCAAAAAT GATGTGTCATTAATCACTGAAACATTGCCGGCTAACGTTGAGTTAGAACAAACGGTCAAAACCGTGGTCCCGACGCGTGG CGCGATTGTCAGGGCGAACTATCTGGCAAGCGTAGGCGTTCGCATGTTGATGAGCTTGACCCAGCAAAACGGCCAGTCGG TTCCGTTTGGTGCAATTGCCAGCATTGAAGGCGCAGAACACAGCAGCTTTATCGTTGGCGAAAGCGGTCAGGTGTATTTG ACGGGCCTGGCTCCCCAGGTCAACCTGACCGTGAAATGGGGAAATCAATCCGCAAACACCTGCAGGGTGCATTACTCGAT TAATATGGCGAAGCTGAATAACGATGTGATTATCGATAATGCTGCTTGCCGTTAA Protein sequence : MMMAMDYIKVRSPRLALLITIALFGNTQNSYSRDFFNPELVELDNPGTERVDLSGFESGAQAPGNYHVDVVLDDQLVDTR DIMFVLLKEPGGDEKLVPCLSIEQLASWGVKTGLFPALKGETSCANLSAIPQASTDFQFAMQRLVLSIPQAAISAQARGS VPPDRWDEGINAALLNYSLSGANNWAKNNNSSNSDSQYANLRPGVNIGPWRLRNYTTWSRDSQGHDAWDTVYTYAQRTII PLKSQLTLGDSSAPADVFDSMPFRGGQLASDDDMLPDSLKGYAPVVRGIARTNAQVIIRQNGYQIYQSFVAPGAFEITDM YPTGGAGDLDVTIKEADGSEQHFSVPFASLPVLQREGRIKYALTGGQYRSYNGSVDKTPFGQMSVILGLPYGFTFYGGLQ ESSKYQSLAAGVGKNMGDFGAISSDITQGWSTPYNMPKSNGQSWRARYSKNFASTGTNFAIAGYRYSTSGYYGMQEVLDS YGDSNALQDRRRNRAELTLSQGLGDNLGSLMLNASHEDYWNSGKAMESWSVGYNNYWHSISYGLTWTLSRNGSTGSYSAH QSDGKNQMLALNISIPLEKLLPQTWANYGMNASKHNGTTHSVGLNGVAMPNNALNWNIQQGYGTHDVAYTGNMNGDYRGT YGELTAGYSYDKNTDRLNYGIQGGVVAHANGVTFSQPLGETNVLIAAPGAAGVGIQNMTGATTDYRGYTLASNLMPYRKN DVSLITETLPANVELEQTVKTVVPTRGAIVRANYLASVGVRMLMSLTQQNGQSVPFGAIASIEGAEHSSFIVGESGQVYL TGLAPQVNLTVKWGNQSANTCRVHYSINMAKLNNDVIIDNAACR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 3e-137 | 42 |
| lpfC | NP_709462.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 4e-136 | 41 |
| lpfC | NP_839216.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 4e-136 | 41 |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 3e-139 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Kvar_2589 | YP_003439511.1 | fimbrial biogenesis outer membrane usher protein | VFG0454 | Protein | 2e-160 | 45 |
| Kvar_2589 | YP_003439511.1 | fimbrial biogenesis outer membrane usher protein | VFG0876 | Protein | 5e-142 | 41 |
| Kvar_2589 | YP_003439511.1 | fimbrial biogenesis outer membrane usher protein | VFG0446 | Protein | 6e-140 | 41 |
