Gene Information

Name : Kvar_0988 (Kvar_0988)
Accession : YP_003437928.1
Strain : Klebsiella variicola At-22
Genome accession: NC_013850
Putative virulence/resistance : Virulence
Product : periplasmic solute binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 1038098 - 1039015 bp
Length : 918 bp
Strand : -
Note : PFAM: periplasmic solute binding protein; KEGG: kpu:KP1_4347 iron transporter periplasmic binding component

DNA sequence : 
ATGCTACACCTGACACCGCTGAAATCATTGCTGCTGGCCAGCGCGCTGGCTCTGCTGGCCGCGACGCCGGCCACCGCGCA
GGAGAAATTCAGGGTTATCACTACCTTCACGGTTATCGCCGATATGGCGCAGAACGTGGCCGGCGACGCCGCCGTCGTCA
GCTCCATCACTAAACCGGGCGCGGAGATCCATGATTACCAGCCCACGCCCGGCGATATCAAACGCGCGCAGGGGGCGCAG
CTGATCCTCAGCAATGGGCTTAATCTCGAGCGGTGGTTTGCCCGTTTTTATCAGCACTTACAGGGCGTTCCGGAGGTGGT
AGTCAGCGAGGGGATCCAGCCGATGGGCATCAGCGCGGGCCCCTATAGCGGGAAGCCCAATCCCCATGCCTGGATGTCGG
CAGATAACGCCTTGATCTATGTCGATAACATTCGCGATGCGCTGGTGAAGTACGATCCGCCTCAGGCCGACACCTATCGC
CGTAACGCCGAGGCCTATAAGGAGAAGATCCGCCAGACGATGGCGCCGCTGCAGGCCAGACTGGCGCAGCTGCCGGCGGA
TAAGCGCTGGCTGGTCACCAGCGAGGGGGCCTTCTCCTATCTGGCCCACGACTATGGTCTGCGCGAACTGTATCTGTGGC
CGATCAATGCCGACCAGCAGGGCACCCCGCAACAGGTGCGCAAGGTTATCGACACCATGAAGAAAGAACGCATCCCGACC
ATCTTCAGCGAAAGCACCATCTCCGATAAACCGGCGCGTCAGGTGGCGCGCGAAGCCGGGGCCCACTACGGCGGCGTGCT
GTATGTCGATTCGCTGAGCGCCGCCGACGGCCCGGTGCCGACCTGGCTCGACCTGCTGCGCGTCACCACCGAAACCATCG
TCAACGGTATCCAGGACGGGATGAGGAAGCAGCCATGA

Protein sequence : 
MLHLTPLKSLLLASALALLAATPATAQEKFRVITTFTVIADMAQNVAGDAAVVSSITKPGAEIHDYQPTPGDIKRAQGAQ
LILSNGLNLERWFARFYQHLQGVPEVVVSEGIQPMGISAGPYSGKPNPHAWMSADNALIYVDNIRDALVKYDPPQADTYR
RNAEAYKEKIRQTMAPLQARLAQLPADKRWLVTSEGAFSYLAHDYGLRELYLWPINADQQGTPQQVRKVIDTMKKERIPT
IFSESTISDKPARQVAREAGAHYGGVLYVDSLSAADGPVPTWLDLLRVTTETIVNGIQDGMRKQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-107 84
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 5e-107 84
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 5e-107 84
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 5e-107 84
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 4e-107 84

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Kvar_0988 YP_003437928.1 periplasmic solute binding protein BAC0349 Protein 2e-107 84
Kvar_0988 YP_003437928.1 periplasmic solute binding protein BAC0439 Protein 2e-85 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Kvar_0988 YP_003437928.1 periplasmic solute binding protein VFG0525 Protein 2e-107 84