Gene Information

Name : lysU (HTH_0174)
Accession : YP_003431842.1
Strain : Hydrogenobacter thermophilus TK-6
Genome accession: NC_013799
Putative virulence/resistance : Virulence
Product : lysyl-tRNA synthetase
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG1190
EC number : -
Position : 179296 - 180999 bp
Length : 1704 bp
Strand : -
Note : -

DNA sequence :
ATGGATCAGGAGAGACTCAAAAAACTTGAAAAATTGAAAGAACTTGACAATCCGTATCCTCACAAGTTTGAGGTAGATAG
ATTCATAGAGGATATAAGGCAGATGTTTGAAAAAGACCCATCGGGAGAGGAGGTGTGTATAAAGGGTAAAGTCAAGAGGG
TATCCAAGATAGATGAAGGCTTTCTGGTGAGAGTTGCTGACCAAGAAGGTGTTGAAATGCTCGTTATCACAGCGCACAAT
TTGAATCAGGGAGAGGAGTACATCCTTAAGGGTAAGCTGGTAAGATACGAAGGGAAGCTAACTTTAAAGGATGCTGAACC
TTCTGATAATCAGGCGATAGACATAAAGAGTTTAAAAGAAGCTTACGATTTTGACCCCAACTTTTATCAAGTCAGACTTG
CTGGGAGACTTGTATCTCTCAGAAGTATGGGCAAAGCCATCTTTGGACACCTTCAGGATGCGACGGGAAAAGTGCAGATA
TACATAAAAAAGGATGTAGTTGGAGATGAGAAGTTTAAGGTGTTTGATGACCTTTTTGACCTGGGAGATGTGATAGGAGT
TGTGGGAAGGCTTTTCAGGACCAGCACTGGAGAATTAACTGTTGAGGTTCAAGACTTTAAAATGCTTGCCAAAAGTCTCC
ATCCCTTACCAGAAAAGTGGCACGGACTAAAGGATGTGGAAGTTCGCTACAGACAGAGGTATCTGGACCTTATATCCAAC
GAAAAGGCAAGAAGAATAACCCTGCTCAGAAGTAAACTCCTTTCGGAGATAAGAAAGTTCCTTGAAGAGAGAGGATTTAT
AGAGGCGGAAACGCCAGTCCTTCAACACATTGCCTCTGGTGCCAACGCCAAACCTTTTATCACATATCACAACTACCTGG
AACAGAACCTATACCTAAGGATAGCACCCGAACTTTACCTAAAGAGGCTTATTGTTGGAGGCTTCAACAGAGTTTACGAG
CTTGGCAAGAACTTCAGAAACGAAGGCGTGGACACCACTCACAATCCAGAATTTACCATGCTGGAGTTTTACTGCGCTTA
CTGGGACTATAAGGACCTCATGGAATTCACCCAAGAGCTTTTCTCTCACCTTCTTAAAAAACTCGTGGGAAGCCTTAAGA
TAACCTATCAGAACTACACCCTTGACTTTACCCCCCCTTACAAAGTATACAGATACTTTGACCTTCTTTTGGAAAAAACC
GGCAAAGACAAGGATTTCTTTTTAAGGCACGAAAAAGAAGTCAGAAAACTTGCCGCCGAGCTGGGCATTCCCAAAGCACA
GGAGCTTACTCACGCTAAGCTTCTTGACAAGATATTTGATGTGCTGGTGGAGGACGAGCTTATAGGTCCCGCTTTTGTGA
TTGACTTTCCCAAACTGCTCTCACCGCTTGCCAAAACCCACAGAGAAGATGAAGACCTGGTAGAAAGGTTTGAGCTTTTT
GTAGCCGGAAAAGAGATAGCCAACGCTTACACGGAACTTAACGATCCCATAGAACAGAGAGATAGGTTTTTACAGCAGAT
AAAGGAGAAGGAGATGGGGGATGAGGAGGCTATGCAGATGGACGAGGACTTTATTACCGCCTTGGAGTATGGCATGCCCC
CCACTGCTGGAGAGGGCATAGGTATAGACAGATTAGTGATGCTCCTTGCGGATGTGGACTCTATAAGGGAGGTTATCCTC
TTTCCTGCTTTACGGCAGCGATGA

Protein sequence :
MDQERLKKLEKLKELDNPYPHKFEVDRFIEDIRQMFEKDPSGEEVCIKGKVKRVSKIDEGFLVRVADQEGVEMLVITAHN
LNQGEEYILKGKLVRYEGKLTLKDAEPSDNQAIDIKSLKEAYDFDPNFYQVRLAGRLVSLRSMGKAIFGHLQDATGKVQI
YIKKDVVGDEKFKVFDDLFDLGDVIGVVGRLFRTSTGELTVEVQDFKMLAKSLHPLPEKWHGLKDVEVRYRQRYLDLISN
EKARRITLLRSKLLSEIRKFLEERGFIEAETPVLQHIASGANAKPFITYHNYLEQNLYLRIAPELYLKRLIVGGFNRVYE
LGKNFRNEGVDTTHNPEFTMLEFYCAYWDYKDLMEFTQELFSHLLKKLVGSLKITYQNYTLDFTPPYKVYRYFDLLLEKT
GKDKDFFLRHEKEVRKLAAELGIPKAQELTHAKLLDKIFDVLVEDELIGPAFVIDFPKLLSPLAKTHREDEDLVERFELF
VAGKEIANAYTELNDPIEQRDRFLQQIKEKEMGDEEAMQMDEDFITALEYGMPPTAGEGIGIDRLVMLLADVDSIREVIL
FPALRQR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 5e-102 48
lysS YP_005163386.1 lysyl-tRNA synthetase Not tested Not named Protein 4e-78 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lysU YP_003431842.1 lysyl-tRNA synthetase VFG1668 Protein 3e-102 48