Gene Information

Name : ykoG (BpOF4_11235)
Accession : YP_003427192.1
Strain : Bacillus pseudofirmus OF4
Genome accession: NC_013791
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 692576 - 693277 bp
Length : 702 bp
Strand : +
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
GTGAACAATGCCCGAATTCTAATTGTTGAAGATGAAGCGAATATTGCTCGAGTCATAGAATTAGAGCTTGAACATGAAGG
CTACGAAACAGAGATTGCAGCAGATGGACTAAGCGCACTAGAGCAGATTGAGCAAGGCGGATGGTCTTTGATCCTGCTAG
ATGTGATGCTGCCGCGATTAAGCGGAATGGAAGTGTTAAGAAGAATACGGAAGGAAGGGAATACGACTCCAGTTATTATG
TTAACGGCTCGCGATACCATAGTAGATAAAGTGATGGGCCTTGATCAAGGTGCAAATGATTATGTGACGAAGCCTTTTGA
GATTGAAGAGCTGTTAGCACGCATAAGAGCCTGCCTCAGAACTCAACTCAGTACAAGCGGTACACATCTTGATGAAGGTG
AATTAACGTTAGCTGATTTGTATGTAAATGAACGAACACGAGAAATTAAACGCGGAGAAACAACGATTGAGCTTACTCCG
CGGGAATTTGATTTACTTGTCTATTTGCTGCGGCATCCCGAGCAGGTAATGACAAGAGAGCAAATTTTAGAACATGTATG
GGGATTTGATTATTTTGGTGATACGAATGTTGTCGATGTCTATATCCGCTATATGAGACAGAAGCTCGATAAGCCATTTG
ATGCTCCTCTCATTCATACGGTCAGAGGGGTCGGCTATGTAATGAAGGAATCCGTTACATGA

Protein sequence : 
MNNARILIVEDEANIARVIELELEHEGYETEIAADGLSALEQIEQGGWSLILLDVMLPRLSGMEVLRRIRKEGNTTPVIM
LTARDTIVDKVMGLDQGANDYVTKPFEIEELLARIRACLRTQLSTSGTHLDEGELTLADLYVNERTREIKRGETTIELTP
REFDLLVYLLRHPEQVMTREQILEHVWGFDYFGDTNVVDVYIRYMRQKLDKPFDAPLIHTVRGVGYVMKESVT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-32 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-31 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ykoG YP_003427192.1 DNA-binding response regulator HE999704.1.gene1528. Protein 8e-43 51
ykoG YP_003427192.1 DNA-binding response regulator NC_002952.2859858.p0 Protein 3e-38 48
ykoG YP_003427192.1 DNA-binding response regulator AE015929.1.gene1106. Protein 9e-35 48
ykoG YP_003427192.1 DNA-binding response regulator NC_007622.3794948.p0 Protein 3e-38 48
ykoG YP_003427192.1 DNA-binding response regulator NC_003923.1003417.p0 Protein 3e-38 48
ykoG YP_003427192.1 DNA-binding response regulator NC_013450.8614146.p0 Protein 3e-38 48
ykoG YP_003427192.1 DNA-binding response regulator NC_002951.3238224.p0 Protein 3e-38 48
ykoG YP_003427192.1 DNA-binding response regulator NC_007793.3914065.p0 Protein 3e-38 48
ykoG YP_003427192.1 DNA-binding response regulator NC_002758.1121390.p0 Protein 3e-38 48
ykoG YP_003427192.1 DNA-binding response regulator NC_010079.5776364.p0 Protein 3e-38 48
ykoG YP_003427192.1 DNA-binding response regulator BAC0125 Protein 1e-38 46
ykoG YP_003427192.1 DNA-binding response regulator NC_012469.1.7685629. Protein 2e-35 44
ykoG YP_003427192.1 DNA-binding response regulator BAC0308 Protein 3e-34 43
ykoG YP_003427192.1 DNA-binding response regulator BAC0197 Protein 1e-36 43
ykoG YP_003427192.1 DNA-binding response regulator AF155139.2.orf0.gene Protein 2e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ykoG YP_003427192.1 DNA-binding response regulator VFG1390 Protein 1e-42 45
ykoG YP_003427192.1 DNA-binding response regulator VFG0596 Protein 3e-32 44
ykoG YP_003427192.1 DNA-binding response regulator VFG1389 Protein 2e-35 43
ykoG YP_003427192.1 DNA-binding response regulator VFG1386 Protein 3e-41 42