Gene Information

Name : fdcA (BpOF4_11070)
Accession : YP_003427159.1
Strain : Bacillus pseudofirmus OF4
Genome accession: NC_013791
Putative virulence/resistance : Virulence
Product : iron (III) dicitrate ABC transporter ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 652170 - 653057 bp
Length : 888 bp
Strand : +
Note : COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components

DNA sequence : 
ATGAAAAAGGCTGACAAAGGGCTGAGTGAAGTAACTTCAATACAAACAAATCGTCATGCCATCAGTGCAAGCGAGTTAAC
ATTAGGTTACGATGAAAAAGTAGTGATCGATCAATTAGATGTGCATATCCCTGAAGGTGAGATTACGGTTTTCATAGGGG
GAAATGGCTGCGGAAAATCAACGCTGCTTAGATCACTGGCGCGTCTTTTAAAGCCTCAGTCCGGTTCGATTCTCTTAGAC
GGCGAAGCTATTCATAAGCAATCTACTAAAGAAATTGCACGCCAGTTGGCCATACTCCCTCAAGGGCCTGAAGCACCAGA
GGGGTTGACGGTCCTTCAATTAGTCAAACAAGGAAGATTCCCTTATCAAGGACTGTTCTCCAAATGGACGGCAATGGATG
AGGAGAAAGTGCAAGAGGCATTGAGAGCGACTCATTTAACGGAGCTAAAAGACCGCCCTGTTGATTCATTATCAGGGGGG
CAAAGACAGCGCGCATGGATTGCGATGACTCTTGCTCAAGATACTGATATTATTTTGCTTGATGAGCCGACTACTTATCT
GGATATGACCCACCAGATTGAAATATTGGATTTGTTATTTGATTTAAATGAAAAAGAAGGGCGGACGATTGTCATGGTGC
TGCATGACCTTAACTTAGCATGTCGTTACGCGCATCACTTAATAGCTGTTCAAGATAAGGGGATTTATGCAGAAGGGAAG
CCTGAGGACGTCATTACCTGTGATTTAGTCCGTGACGTATTTAAAATGGAGTGTCAAGTGACAGCCGATCCTCTATTTGG
TACTCCTTTATGTATCCCGCATGGGAAAGGGAGATGCGTTGTGCGTGAGGAGGTCGAGAGAATTGATCCTTACAAAGCTC
TCAGCTGA

Protein sequence : 
MKKADKGLSEVTSIQTNRHAISASELTLGYDEKVVIDQLDVHIPEGEITVFIGGNGCGKSTLLRSLARLLKPQSGSILLD
GEAIHKQSTKEIARQLAILPQGPEAPEGLTVLQLVKQGRFPYQGLFSKWTAMDEEKVQEALRATHLTELKDRPVDSLSGG
QRQRAWIAMTLAQDTDIILLDEPTTYLDMTHQIEILDLLFDLNEKEGRTIVMVLHDLNLACRYAHHLIAVQDKGIYAEGK
PEDVITCDLVRDVFKMECQVTADPLFGTPLCIPHGKGRCVVREEVERIDPYKALS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-61 50
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-61 50
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-59 48
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 3e-56 47
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-56 47
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-56 45
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-56 45
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 3e-53 44
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-49 44
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-49 44
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-49 44
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-49 44
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-50 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fdcA YP_003427159.1 iron (III) dicitrate ABC transporter ATPase BAC0164 Protein 2e-53 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fdcA YP_003427159.1 iron (III) dicitrate ABC transporter ATPase VFG0925 Protein 7e-67 51
fdcA YP_003427159.1 iron (III) dicitrate ABC transporter ATPase VFG1042 Protein 2e-53 44